PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13200_BGI-A2_v1.0
Common NameF383_20386
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 463aa    MW: 50523.7 Da    PI: 6.2465
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13200_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.82.2e-24206249144
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                 d+ep+rCrRtDGKkWRCsr+v +++k+CErH h++r rsrk++e
  Cotton_A_13200_BGI-A2_v1.0 206 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 249
                                 79***************************************987 PP
2QLQ58.42.1e-20150184236
                         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                                 +FTaaQ+q+L++Q ++yKy++a++PvP+eLl +++
  Cotton_A_13200_BGI-A2_v1.0 150 PFTAAQWQELERQTMIYKYMMASVPVPAELLIPLT 184
                                 9******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-12149185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.866150185IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-14150183IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.479206250IPR014977WRC domain
PfamPF088799.5E-20207249IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDTRNNAFVG TEKGLGRTDE ECDVGLGLMM MQQVEESCPN TSFMAMLPSH NHNHLSSSSS  60
SSSSSSCYVE GFDGGASGGG PLVCNTSNQE PCRGDIYDVV GAASASASVS SAAAAVVLKS  120
LHHHSFSADP PFPHHFSGEM AAAPANARVP FTAAQWQELE RQTMIYKYMM ASVPVPAELL  180
IPLTKNPSNV AIKGSLELGF SSNSSDPEPW RCRRTDGKKW RCSRDVAPDQ KYCERHSHKS  240
RPRSRKPVEL PNHSNININN NDHKSQTLHN MASDGTTNQP HQNPHFTNHH DPHFFTSSFD  300
QSRCLEWFMK GETTVPFASN PEWQRTNYGV NLQAQHHLNE QFTPSLASLE GSLNLNQTHS  360
QETRAFIDAW SIAEREVVEM EGIGSCKRPV SSNEKLPLSS LTLSMSGGGN ENNQEEDDEN  420
SHHEMRGTLS WMGSSPGGPL AEALCLGIAT SQTTSTSSCS KST
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085412e-73DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732759.10.0PREDICTED: growth-regulating factor 8-like isoform X2
TrEMBLA0A0B0NQU20.0A0A0B0NQU2_GOSAR; Pyridoxine 5'-phosphate synthase
STRINGGorai.008G259500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-39growth-regulating factor 8