PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13127_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 382aa    MW: 43840.2 Da    PI: 7.4322
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13127_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.3e-51501761128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lppGfrFhPtdeelv +yLk+k++g ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+g
  Cotton_A_13127_BGI-A2_v1.0  50 LPPGFRFHPTDEELVGYYLKRKTQGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAG 131
                                 79****************************.99**************95334445667************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatgkd++v++  +++ g +ktLvfy+grap g + dWvmheyrl
  Cotton_A_13127_BGI-A2_v1.0 132 YWKATGKDRKVVC--QSASGYRKTLVFYRGRAPLGDRMDWVMHEYRL 176
                                 ************9..6789**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5744198IPR003441NAC domain
PROSITE profilePS5100557.53250198IPR003441NAC domain
PfamPF023651.4E-2851176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MIVLFTGCIL WRLYSILDKK SSVYKSFYFW IFQIFNRFSL GTSIMEGGSL PPGFRFHPTD  60
EELVGYYLKR KTQGLEIELE VIPVIDLYKF DPWELPEKSF LPKRDLEWFF FCPRDRKYPN  120
GSRTNRATKA GYWKATGKDR KVVCQSASGY RKTLVFYRGR APLGDRMDWV MHEYRLSDEP  180
SQGSNNQGAF ALCRVVKRNE PRATDAHGKP KAMRVGNRSS NVELTSPIVS NEPLSNSGDI  240
SCQTSYPNNE SRYSSPITSP YPYEVTQVPT FEPVSVATDP TSIWVSPELI LDSSKDYPQI  300
CKTAAQYLPQ YEFPSTLTRW QQYEQRDFSP SSSHSNFGEI EHVDGLSHIG CRPPYSEHAN  360
YMDFYGNEGN DQTGSFNCPN PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-504919916166NO APICAL MERISTEM PROTEIN
1ut4_B5e-504919916166NO APICAL MERISTEM PROTEIN
1ut7_A5e-504919916166NO APICAL MERISTEM PROTEIN
1ut7_B5e-504919916166NO APICAL MERISTEM PROTEIN
3swm_A7e-504919919169NAC domain-containing protein 19
3swm_B7e-504919919169NAC domain-containing protein 19
3swm_C7e-504919919169NAC domain-containing protein 19
3swm_D7e-504919919169NAC domain-containing protein 19
3swp_A7e-504919919169NAC domain-containing protein 19
3swp_B7e-504919919169NAC domain-containing protein 19
3swp_C7e-504919919169NAC domain-containing protein 19
3swp_D7e-504919919169NAC domain-containing protein 19
4dul_A5e-504919916166NAC domain-containing protein 19
4dul_B5e-504919916166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703565.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
RefseqXP_017624507.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
SwissprotO496971e-104NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A0B0NNS20.0A0A0B0NNS2_GOSAR; NAC domain-containing 78-like protein
TrEMBLA0A1U8KMA20.0A0A1U8KMA2_GOSHI; NAC domain-containing protein 86-like isoform X1
TrEMBLA0A2P5XHN40.0A0A2P5XHN4_GOSBA; Uncharacterized protein
STRINGGorai.004G186700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-107NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]