PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_13123_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LSD | ||||||||
Protein Properties | Length: 68aa MW: 6817.92 Da PI: 7.8313 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 48.2 | 1.8e-15 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C+++ Cotton_A_13123_BGI-A2_v1.0 28 CSGCRNLLMYPAGATSVCCAVCNAI 52 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 7.2E-15 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.8E-13 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MPVPLAPYPT PSGSYTPPAN GAQSQLVCSG CRNLLMYPAG ATSVCCAVCN AITAVPPPGT 60 SSAIHFIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703831.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_016703833.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_016703834.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_016703835.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_016721326.1 | 5e-35 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_016721327.1 | 5e-35 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_017625404.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_017625405.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_017625406.1 | 6e-35 | PREDICTED: protein LOL1-like | ||||
Swissprot | Q93ZB1 | 2e-21 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A0B0PTX4 | 1e-33 | A0A0B0PTX4_GOSAR; Protein LOL1-like protein | ||||
TrEMBL | A0A1U8KS66 | 1e-33 | A0A1U8KS66_GOSHI; protein LOL1-like | ||||
TrEMBL | A0A1U8M3F7 | 1e-33 | A0A1U8M3F7_GOSHI; protein LOL1-like | ||||
TrEMBL | A0A2P5SU98 | 1e-33 | A0A2P5SU98_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G186300.1 | 8e-31 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7293 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 2e-21 | lsd one like 1 |
Publications ? help Back to Top | |||
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