PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13074_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 238aa MW: 27337.6 Da PI: 4.6635

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13074_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.5e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + ++++ewyfF +rd+ky++g r+nrat++g Cotton_A_13074_BGI-A2_v1.0 6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWELAeKsILPSRDSEWYFFGPRDRKYPNGFRTNRATRAG 87 79**************************.99**********84335566899********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+tgkd++v s +++++g+kktLv+y+grap+g++tdWvmheyrl Cotton_A_13074_BGI-A2_v1.0 88 YWKSTGKDRRVAS-QNRAIGMKKTLVYYQGRAPQGVRTDWVMHEYRL 133 *********.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.431	6	156	IPR003441	NAC domain
Pfam	PF02365	2.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE VDLYKCEPWE LAEKSILPSR 60 DSEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVAS QNRAIGMKKT LVYYQGRAPQ 120 GVRTDWVMHE YRLDDKESED YCGIQDSYAL CRVFKKNGIC SETKDQGRCN MLVMECSQSV 180 INDSETMSPD LPLASSSSFI EEEDKDDSWM QFITDDPWCS SNTTALAGDD VSNVALTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-57	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847199	0.0	KC847199.1 Gossypium hirsutum NAC domain protein NAC22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016721381.1	1e-179	PREDICTED: NAC domain-containing protein 86-like isoform X2
Swissprot	A4VCM0	5e-90	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A1U8M3K7	1e-177	A0A1U8M3K7_GOSHI; NAC domain-containing protein 86-like isoform X2
TrEMBL	A0A2P5XLU9	1e-177	A0A2P5XLU9_GOSBA; Uncharacterized protein
STRING	Gorai.006G189600.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8504	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-126	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]