PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12989_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 377aa    MW: 42376.7 Da    PI: 7.1139
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12989_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-152370148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W++eEde+l ++    G g+W+ Ia+  g+ R++k+c++rw +yl
  Cotton_A_12989_BGI-A2_v1.0 23 KGLWSPEEDEKLMKYMLTNGQGCWSDIAKNAGLQRCGKSCRLRWINYL 70
                                678*******************************************97 PP
2Myb_DNA-binding40.18.3e-1376170147
                                 TSSS-HHHHHHHHHHHHHTTTT.................................................-HHHHHHHHTTT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.................................................tWktIartmgkg 34 
                                 rg+++++E+el+++++  lG++                                                  W+ Ia++++ g
  Cotton_A_12989_BGI-A2_v1.0  76 RGAFSPQEEELIIHLHSILGNRvvkgysipwnmalliynlplqktscickkitsdrphtgtshhvhhsfflGWSQIAARLP-G 157
                                 89*******************************************************************************.* PP

                                 S-HHHHHHHHHHH CS
             Myb_DNA-binding  35 Rtlkqcksrwqky 47 
                                 Rt++++k++w++ 
  Cotton_A_12989_BGI-A2_v1.0 158 RTDNEIKNFWNST 170
                                 **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9781874IPR017930Myb domain
SMARTSM007171.3E-112272IPR001005SANT/Myb domain
SuperFamilySSF466899.17E-222374IPR009057Homeodomain-like
PfamPF002492.5E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-242477IPR009057Homeodomain-like
CDDcd001679.30E-102670No hitNo description
PROSITE profilePS500907.72471171IPR017877Myb-like domain
SMARTSM007171.5E-875173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-207896IPR009057Homeodomain-like
SuperFamilySSF466899.17E-22143172IPR009057Homeodomain-like
PfamPF002496.4E-6147170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-20147176IPR009057Homeodomain-like
CDDcd001673.18E-5148171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MRKPDPNMPK NNTSTTNKMK LRKGLWSPEE DEKLMKYMLT NGQGCWSDIA KNAGLQRCGK  60
SCRLRWINYL RPDLKRGAFS PQEEELIIHL HSILGNRVVK GYSIPWNMAL LIYNLPLQKT  120
SCICKKITSD RPHTGTSHHV HHSFFLGWSQ IAARLPGRTD NEIKNFWNST LKKRLKNNTS  180
TSSSPNNSDS SEPRDVVGGI FPLHEHHAMT FCMDSISSSS TISMPPMVTG NQFDPFPLLN  240
INRYDITGGA AGLLDVPTCL AQGGLGEALY GDYGVLEPGK IALEGDFSLP PLESRSIEEG  300
NTAINSIDRK SNNNNHHHHH NNNTCFNNTD QSFKVGEAFG LENHHWEGEN LRMGEWDLEG  360
LMDNISSFPN FLDFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-182117525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144040.0JX614404.1 Gossypium hirsutum clone NBRI_GE57753 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625618.10.0PREDICTED: transcription factor MYB46
TrEMBLA0A1U8LRE70.0A0A1U8LRE7_GOSHI; transcription factor MYB46-like
STRINGGorai.004G172700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70772642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-79myb domain protein 83