PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12983_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 286aa    MW: 31245.8 Da    PI: 8.1563
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12983_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1011.2e-31155211158
                   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                 +ep+YVNaKQy++Il+RRq Rak+e ekk  +k rkpylheSRh hA+rR+Rg+gGrF
  Cotton_A_12983_BGI-A2_v1.0 155 EEPVYVNAKQYHGILRRRQIRAKAELEKKA-IKVRKPYLHESRHLHAMRRARGCGGRF 211
                                 69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-36153214IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.567154214IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.1E-27156211IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.4E-24157179IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860159179IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.4E-24188211IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MPAKPGNDDQ QIDHGAQSVL QSTAYSEPWW KGVGTNPFVE AASKSPSVEQ LNGSVANGAV  60
HSQAHGDLGN EDGRNGEDRQ HLKHVPSTTP LTLGEHHEPN SQMELVGHSI VLTSYPYSDP  120
QYGGMLTSYG PQMMVSPHLY GMHHARMPLP LQMEEEPVYV NAKQYHGILR RRQIRAKAEL  180
EKKAIKVRKP YLHESRHLHA MRRARGCGGR FLNTKKQGDD VTSPTSQKGM NSDENISTKS  240
SILSGSECVS ATGAGNMNSF YGQQEGNCAR DIMQGNGAQH GAPSIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19155217264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623612.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like
RefseqXP_017623613.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBLA0A2P5Y8A30.0A0A2P5Y8A3_GOSBA; Uncharacterized protein
STRINGGorai.004G172100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160191014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-50nuclear factor Y, subunit A1