PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_12843_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 19665.4 Da PI: 5.4345 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 40 | 89 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f+tae Aa a+++a+++++g Cotton_A_12843_BGI-A2_v1.0 40 YRGVRKRP-WGKYAAEIRDSTRNG--ERVWLGTFDTAEAAALAYDQAALAIRG 89 9*******.**********44465..************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.3E-36 | 39 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.248 | 39 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-13 | 39 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 39 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-11 | 40 | 51 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-23 | 40 | 98 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.47E-19 | 40 | 97 | No hit | No description |
PRINTS | PR00367 | 5.5E-11 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MLLLGVLNQA PAPAENSIDT ASVNCTSRDE HEVNSKEVSY RGVRKRPWGK YAAEIRDSTR 60 NGERVWLGTF DTAEAAALAY DQAALAIRGS MAILNFPMDK VYESLLEMNY GFEEGCSPVL 120 TMKKRYSIKG KRSGKKKIIK KEKESMEMEN IIVLEDLGAD YLEELLSMSE SATRW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-29 | 33 | 99 | 8 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618007.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 5e-57 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1U8IAG1 | 1e-124 | A0A1U8IAG1_GOSHI; ethylene-responsive transcription factor 1B-like | ||||
STRING | Gorai.013G186700.1 | 1e-102 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2275 | 28 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 4e-41 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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