PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12795_BGI-A2_v1.0
Common NameF383_27024
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 462aa    MW: 52257.4 Da    PI: 10.0801
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12795_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07317338627
                                 -SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                                 C++f +tG C+ G++Ck +H++
  Cotton_A_12795_BGI-A2_v1.0 317 CPNFEATGSCPLGSTCKLHHPK 338
                                 *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.159208236IPR000571Zinc finger, CCCH-type
SMARTSM003560.015209235IPR000571Zinc finger, CCCH-type
SMARTSM003565.8237260IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869240261IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-4262287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.493262288IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.69289310IPR000571Zinc finger, CCCH-type
SMARTSM003561.1289315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005311339IPR000571Zinc finger, CCCH-type
SMARTSM003560.41316338IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-5317338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAHKRSFKLN SVSSYSSSLS TIGRKMLLLR KRNTVYTRSI NGFSIHKSKV LSVGGSSLKW  60
SKSIERHSRK ANEEATLAVA EAERKKREQN GNVSRTGKKG LSCHKVHGTE VRRGERIFRI  120
GSVRYKMDSS RRSLQRISDD ASSCSASQQS ENSTKKSYVP RRLVIGNDEY VRIGNGNQLV  180
RDPKKRTRVL ASEKVRWSLH TARLRLVKKR KYCQFFTRFG KCNKDDGKCP YIHDPSKISV  240
CTKFLKGLCS NPNCKLTHKV IPERMPDCSY FLQGLCTNEN CPYRHVHVNP NASTCEGFLR  300
GYCADGNECR KKHSYVCPNF EATGSCPLGS TCKLHHPKNR SKAKKSKRSM EHNTARGRYF  360
GIDISEPKRM GLERQQEVLE EDNICFDGKF SDYISLGVSE DEVGGLHQAN CDETSFGDND  420
STVLQSEDLD ELIKPIRIMS ECKITESFLV TESSSGKHLA IQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dnh_C2e-1521333842169Cleavage and polyadenylation specificity factor subunit 4
6fbs_C1e-1521333841168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C1e-1521333841168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641530.10.0PREDICTED: uncharacterized protein At1g21580
SwissprotQ3ED781e-179C3H7_ARATH; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A0B0MLP50.0A0A0B0MLP5_GOSAR; Uncharacterized protein
STRINGGorai.009G249000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57801012
Publications ? help Back to Top
  1. Hématy K, et al.
    The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis.
    PLoS Genet., 2016. 12(2): p. e1005817
    [PMID:26828932]