PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_12742_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 299aa MW: 33428.1 Da PI: 4.5642 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.6 | 4.9e-37 | 31 | 86 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++ Cotton_A_12742_BGI-A2_v1.0 31 PNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKGRRG 86 58**************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 15 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.313 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-31 | 31 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MFAISESMLQ CAPRPMLAID RNWKSNAELA PNCPRCASAN TKFCYYNNYS LSQPRYFCKG 60 CRRYWTKGGS LRNVPVGGGC RKGRRGKSNR VDKNGAQVST NYSKNLTSFG THQEHMMGAT 120 TSHGDTGNQP GPATTTGSDI DLAVIFAQFL NQSTSSDQPE IILTQEWPNE GMDPWSCLEQ 180 DTNSQNDSSM ELPVVHTIPE SYNMLQEMPQ VEQHLKDNSV EELLESDEIN AFGLQNLLAD 240 EMVQDVFWSN YAANTPSFEC QLQQLESFPV DDQLKISANL RAETWTSFDL SGSELFSKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017640810.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2 | ||||
TrEMBL | A0A2P5WZU0 | 0.0 | A0A2P5WZU0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G252800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6462 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 4e-38 | Dof family protein |