PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12742_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 299aa    MW: 33428.1 Da    PI: 4.5642
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12742_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof117.64.9e-373186661
                      zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                                 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk ++ 
  Cotton_A_12742_BGI-A2_v1.0 31 PNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKGRRG 86
                                58**************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-271576IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.3133185IPR003851Zinc finger, Dof-type
PfamPF027011.3E-313184IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MFAISESMLQ CAPRPMLAID RNWKSNAELA PNCPRCASAN TKFCYYNNYS LSQPRYFCKG  60
CRRYWTKGGS LRNVPVGGGC RKGRRGKSNR VDKNGAQVST NYSKNLTSFG THQEHMMGAT  120
TSHGDTGNQP GPATTTGSDI DLAVIFAQFL NQSTSSDQPE IILTQEWPNE GMDPWSCLEQ  180
DTNSQNDSSM ELPVVHTIPE SYNMLQEMPQ VEQHLKDNSV EELLESDEIN AFGLQNLLAD  240
EMVQDVFWSN YAANTPSFEC QLQQLESFPV DDQLKISANL RAETWTSFDL SGSELFSKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640810.10.0PREDICTED: dof zinc finger protein DOF1.2
TrEMBLA0A2P5WZU00.0A0A2P5WZU0_GOSBA; Uncharacterized protein
STRINGGorai.009G252800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.14e-38Dof family protein