PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_12652_BGI-A2_v1.0 | ||||||||
Common Name | F383_10985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 925aa MW: 102859 Da PI: 6.7979 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 93.7 | 1.3e-29 | 606 | 657 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk+Lgvc+T+LKriCRq+GIkRWP+Rkik++ Cotton_A_12652_BGI-A2_v1.0 606 AEKTITLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGIKRWPSRKIKKV 657 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.905 | 596 | 677 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.6E-26 | 609 | 657 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 9.16E-23 | 828 | 915 | No hit | No description |
PROSITE profile | PS51745 | 26.329 | 829 | 912 | IPR000270 | PB1 domain |
SMART | SM00666 | 5.2E-28 | 829 | 912 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 3.2E-22 | 830 | 909 | No hit | No description |
Pfam | PF00564 | 3.1E-19 | 831 | 911 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.90E-41 | 831 | 910 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 925 aa Download sequence Send to blast |
MEDTIFSQGT MLGGLPDSAM DFDYMDELLL DGCWLETTQG SDFLNPTLPF SNNFFDPAFA 60 WPTTESNAGD LGGGLSHQGE NQRSLLSGNS HWNEAQGESL VSPHFSQSHS LDSDCVTDGS 120 EPNRRWWIRP SVNSGPATTV MQRLIQALGY IKAFGKEKDV LVQLWLPVNR GGRRFLTTSE 180 QPFSLDSKSQ KLASYRNISV KYNFPAEEDS KDMAGLPGRV FLSKVPEWTP DVRFFKRDEY 240 PRVGHAQEHD VRGTFALPVF EQGSGTCLGV IEVVMTTEKI KIQPELESVC KALEAVNLRS 300 SITSSTQNIK AYSNCYQAAL PEIKELLRCA CETHRLPLAQ AWVPCIQQGK EGCRHSSENY 360 VHCVSTVDDA CCIADPSIQG FHEACSEHHL LKGQGVVGRA FMTNQPCFMT DITSFKKTEY 420 PLAHHAMMFN LHAAVAIRFR SIHTGKADFV LEFFLPAHCR DPEGQRKMLN SLSIIIQQVC 480 CSLRVVTDKE LVEETDLAVS EVVAPSDGLP IREESLKQQC TRHHSKKLSG ESSSCLTKVQ 540 QSSNTALVLE KEKPRPMLDE KIPEVEQHQQ HISLQESVEC GDSTFNEISF SSVTMGKTSE 600 KRRSKAEKTI TLQVLRQYFA GSLKDAAKSL GVCPTTLKRI CRQHGIKRWP SRKIKKVGHS 660 LQKLQHVIDS VQGASGAFHI SNFYANFPEL ASPKLLGNSA LSTSPLNDKP KQINIQPEGG 720 NFLSQGALSN SPSSSCSQSS SSSHSCSSGT HRPSNFNMPG KEDHIIGDNS GDGELKRVKS 780 DVELHALSQE GPKLFPRSQS LRSLKEQLIC DNLQPISKNT SPIAHDLEAQ RVKVTYGDEK 840 IRFRMQSKWR FKDLLHEIAR RFNIDDISRF DLKYLDDDSE WVLLTCDADM VECIDVCGSS 900 QGNTIKLSLQ VSHHHLDQFS GSTGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017638652.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
Refseq | XP_017638653.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
Swissprot | Q9LE38 | 0.0 | NLP4_ARATH; Protein NLP4 | ||||
TrEMBL | A0A0B0PXA3 | 0.0 | A0A0B0PXA3_GOSAR; Protein NLP4-like protein | ||||
STRING | Gorai.002G115800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3461 | 26 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |