PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12649_BGI-A2_v1.0
Common NameF383_20176, F383_26500
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 262aa    MW: 29870.6 Da    PI: 8.0675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12649_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+W++ Ed+llv++++ +G g+Wk+ +++ g+ R++k+c++rw +yl
  Cotton_A_12649_BGI-A2_v1.0 14 RGPWSPKEDKLLVNYIQSHGEGNWKSLPKKAGLLRCGKSCRLRWMNYL 61
                                89******************************99************97 PP
2Myb_DNA-binding53.55.7e-1767111147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg+ T+eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+ +
  Cotton_A_12649_BGI-A2_v1.0  67 RGNITPEEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNCH 111
                                 7999******************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.885961IPR017930Myb domain
SuperFamilySSF466892.31E-3111108IPR009057Homeodomain-like
SMARTSM007171.8E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-251568IPR009057Homeodomain-like
CDDcd001672.66E-111661No hitNo description
PROSITE profilePS5129426.00762116IPR017930Myb domain
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002495.0E-1567109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2669116IPR009057Homeodomain-like
CDDcd001672.40E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWSPK EDKLLVNYIQ SHGEGNWKSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPEEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNC HLSKRLLNQG  120
TDPNTRKKLS QQATNTRKNI SDTSKPFSER HKIHLPKPIR VTKSSFPRNQ SFELDNHQCN  180
ANTQAGGNPS SDYAYAADHG GENMRGFLAD DLDIQFECES TVLVSEDDSS SLEKLYEEYL  240
QILNQNEDDE MQLDSFAQSL LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624260.10.0PREDICTED: myb-related protein 308-like
SwissprotQ388505e-67MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0B0MDX80.0A0A0B0MDX8_GOSAR; Transcription factor MYB3-like protein
STRINGGorai.004G044000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-69myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]