PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12607_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 608aa    MW: 69045.6 Da    PI: 5.232
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12607_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM184.42.6e-5761331128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lppGfrFhPtdeelvv+yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksg
  Cotton_A_12607_BGI-A2_v1.0   6 LPPGFRFHPTDEELVVYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKSG 87 
                                 79****************************.99***************6434555777************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatgkd++v s ++++vg+kktLv+y+grap+g++t+Wvmheyrl
  Cotton_A_12607_BGI-A2_v1.0  88 YWKATGKDRKVNS-QTRAVGMKKTLVYYRGRAPHGTRTNWVMHEYRL 133
                                 *************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-653157IPR003441NAC domain
PROSITE profilePS5100561.7816157IPR003441NAC domain
PfamPF023651.4E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MGAVSLPPGF RFHPTDEELV VYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH  120
GTRTNWVMHE YRLDERECES ASLGLQDAYA LCRVFKKTAI PPKVPGDHYQ AVATPNQFAC  180
DHSSSFEESS DFGIPIDTRS PSVLNRSPID ICDANEVKWM QSLSHDVFGL NNASFTNYET  240
LPYHPSKVDV ALECARLQHR LALPPLEVED FPRLGFTNHK LMATPPPPMR ETDILQEILS  300
VDPIGHEDAW GASSSNNNAD DFTFMTAKSM YQNQVNEMSC AQYMNKPLEE AITSPIEITE  360
VQGERMTENS RWMGMSSKDL EQYCFMEENK VVPIENISSF TRNEDNGIQG NGHDYNSFEF  420
DDTGINNPEM EDFTHGFIDD DPNDHHFLDE GNMDDLTTSP SFELVEDIKI NHGMFVSTRQ  480
VANTFFHQTL PSQTVQVHQN AMTPTSFHFQ VEKHKGKCMA TTMSTFTKQC KEALSGFLCM  540
LVLLLYVGEE DDGLNGGSKE CNKEKKVTDY LLIKSKTSSW NDFGLLSIRK GGKAMEGAFS  600
IVEHTVYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-58415915167NO APICAL MERISTEM PROTEIN
1ut4_B3e-58415915167NO APICAL MERISTEM PROTEIN
1ut7_A3e-58415915167NO APICAL MERISTEM PROTEIN
1ut7_B3e-58415915167NO APICAL MERISTEM PROTEIN
3swm_A3e-58415918170NAC domain-containing protein 19
3swm_B3e-58415918170NAC domain-containing protein 19
3swm_C3e-58415918170NAC domain-containing protein 19
3swm_D3e-58415918170NAC domain-containing protein 19
3swp_A3e-58415918170NAC domain-containing protein 19
3swp_B3e-58415918170NAC domain-containing protein 19
3swp_C3e-58415918170NAC domain-containing protein 19
3swp_D3e-58415918170NAC domain-containing protein 19
4dul_A3e-58415915167NAC domain-containing protein 19
4dul_B3e-58415915167NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5910152e-70JX591015.1 Gossypium hirsutum clone NBRI_GE26049 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625502.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A2P5X9H20.0A0A2P5X9H2_GOSBA; Uncharacterized protein
STRINGGorai.004G048200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-148NAC domain containing protein 28