PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_12240_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 27989.3 Da PI: 5.4131 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++WT+eEd ll+++++++G gtW++++ + g++R++k+c++rw++yl Cotton_A_12240_BGI-A2_v1.0 10 KDAWTEEEDILLKKCIEKYGEGTWHRVPFRAGLNRCRKSCRLRWLNYL 57 689*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44 | 5.2e-14 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +E +l +++++ lG++ W++Ia +++ gRt++++k++w++yl Cotton_A_12240_BGI-A2_v1.0 63 RGAFADDEVDLMIRLHNVLGNR-WSLIAGRLP-GRTANDVKNYWNTYL 108 788999****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.49 | 5 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-20 | 7 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.12E-27 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-13 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.08E-10 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-23 | 60 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-12 | 62 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.73 | 62 | 112 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-12 | 63 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.36E-9 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEAPSLSVRK DAWTEEEDIL LKKCIEKYGE GTWHRVPFRA GLNRCRKSCR LRWLNYLKPD 60 IKRGAFADDE VDLMIRLHNV LGNRWSLIAG RLPGRTANDV KNYWNTYLRK KMVKPSPKLN 120 IEVIKPRPLN LSVPLDKNNN NNNNDSDHAA VSTPASNSLV SSDSGNNSSY DFSNDNNEIM 180 WWKNMLMNED EPQGFGNNIN HSASGDQFIN EALGDVRTQV VEEDNYGTVD ELFIDFDLWN 240 MLNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-21 | 10 | 112 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC491877 | 4e-91 | KC491877.1 Gossypium arboreum transcription factor AN2 mRNA, complete cds. | |||
GenBank | KF749431 | 4e-91 | KF749431.1 Gossypium hirsutum cultivar Xincaimian 5 myb-related transcription factor A1 (MYBA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647923.1 | 1e-180 | PREDICTED: transcription factor MYB90-like | ||||
Swissprot | Q9FNV9 | 6e-60 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A1U8K0Z0 | 1e-86 | A0A1U8K0Z0_GOSHI; PAP1D-T | ||||
STRING | Gorai.001G087200.1 | 4e-87 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-60 | myb domain protein 113 |
Publications ? help Back to Top | |||
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