PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11975_BGI-A2_v1.0
Common NameF383_03543, F383_09886
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 303aa    MW: 30963.3 Da    PI: 8.4865
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11975_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.11.9e-67902503153
                      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqs 84 
                                 s +a+CqdCGnqakkdC+h+RCRtCCksrg+dC thvkstWvpaa+rrerq + aaa++  a s+ +++ +k++r   +++++
  Cotton_A_11975_BGI-A2_v1.0  90 SSGATCQDCGNQAKKDCTHRRCRTCCKSRGLDCPTHVKSTWVPAARRRERQLMSAAATTAGAGSSgSTSGAKKPRL-VTSQTT 171
                                 56789**********************************************9999998887777746666777776.588999 PP

                      DUF702  85 alsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                 ++s+t++s+++++++++tss          lP +v+++avf+cvrv++v+ ge+e+aYq++v+igGhvfkG+LydqG+e
  Cotton_A_11975_BGI-A2_v1.0 172 TTSHTSTSNTTPPRSFDTSSshqdvgfketLPGQVRAPAVFKCVRVTAVEGGEDEYAYQAVVKIGGHVFKGFLYDQGVE 250
                                 999***************999********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.0E-6292250IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.9E-2794136IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.1E-29202249IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVNEQINGPS SAAAAATALG VGVIPLLTAS PCLPPQNVED TGKFSGMQLW QNQSSSHYLK  60
KPASLLDNNP SMMAGDGGGM GGGSGGSGSS SGATCQDCGN QAKKDCTHRR CRTCCKSRGL  120
DCPTHVKSTW VPAARRRERQ LMSAAATTAG AGSSGSTSGA KKPRLVTSQT TTTSHTSTSN  180
TTPPRSFDTS SSHQDVGFKE TLPGQVRAPA VFKCVRVTAV EGGEDEYAYQ AVVKIGGHVF  240
KGFLYDQGVE GRDGFPNISE LHLGGGGRNA GSSSSPVLDP SDVYAATGGG FLGGGLGYGN  300
PIN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3935231e-133GQ393523.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0488 SSR marker CGR5515 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016727004.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
SwissprotQ94CK95e-88LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0B0NYZ50.0A0A0B0NYZ5_GOSAR; tRNA-dihydrouridine(16/17) synthase [NAD (P)(+)]-like protein
STRINGGorai.004G014800.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-74Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]