PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_11975_BGI-A2_v1.0 | ||||||||
Common Name | F383_03543, F383_09886 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 303aa MW: 30963.3 Da PI: 8.4865 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 218.1 | 1.9e-67 | 90 | 250 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqs 84 s +a+CqdCGnqakkdC+h+RCRtCCksrg+dC thvkstWvpaa+rrerq + aaa++ a s+ +++ +k++r +++++ Cotton_A_11975_BGI-A2_v1.0 90 SSGATCQDCGNQAKKDCTHRRCRTCCKSRGLDCPTHVKSTWVPAARRRERQLMSAAATTAGAGSSgSTSGAKKPRL-VTSQTT 171 56789**********************************************9999998887777746666777776.588999 PP DUF702 85 alsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++s+t++s+++++++++tss lP +v+++avf+cvrv++v+ ge+e+aYq++v+igGhvfkG+LydqG+e Cotton_A_11975_BGI-A2_v1.0 172 TTSHTSTSNTTPPRSFDTSSshqdvgfketLPGQVRAPAVFKCVRVTAVEGGEDEYAYQAVVKIGGHVFKGFLYDQGVE 250 999***************999********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 8.0E-62 | 92 | 250 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.9E-27 | 94 | 136 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 8.1E-29 | 202 | 249 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MVNEQINGPS SAAAAATALG VGVIPLLTAS PCLPPQNVED TGKFSGMQLW QNQSSSHYLK 60 KPASLLDNNP SMMAGDGGGM GGGSGGSGSS SGATCQDCGN QAKKDCTHRR CRTCCKSRGL 120 DCPTHVKSTW VPAARRRERQ LMSAAATTAG AGSSGSTSGA KKPRLVTSQT TTTSHTSTSN 180 TTPPRSFDTS SSHQDVGFKE TLPGQVRAPA VFKCVRVTAV EGGEDEYAYQ AVVKIGGHVF 240 KGFLYDQGVE GRDGFPNISE LHLGGGGRNA GSSSSPVLDP SDVYAATGGG FLGGGLGYGN 300 PIN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ393523 | 1e-133 | GQ393523.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0488 SSR marker CGR5515 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016727004.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 | ||||
Swissprot | Q94CK9 | 5e-88 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A0B0NYZ5 | 0.0 | A0A0B0NYZ5_GOSAR; tRNA-dihydrouridine(16/17) synthase [NAD (P)(+)]-like protein | ||||
STRING | Gorai.004G014800.1 | 1e-160 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5883 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12330.2 | 2e-74 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
---|---|---|---|
|