PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11900_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 226aa MW: 24888.7 Da PI: 5.1265

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11900_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.1	9.2e-18	50	100	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++ +g Cotton_A_11900_BGI-A2_v1.0 50 PVYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSVKG 100 68***998.******843...6********************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.7E-12	50	100	IPR001471	AP2/ERF domain
SMART	SM00380	5.6E-35	51	114	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.75E-21	51	109	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.616	51	108	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.5E-31	51	109	IPR001471	AP2/ERF domain
CDD	cd00018	3.14E-31	52	110	No hit	No description
PRINTS	PR00367	1.6E-9	52	63	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-9	74	90	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MTETESSSNS FSSPPLSPSS PGSTHSRTKS ALDSTNTLKV KRTRDSSKHP VYHGVRMRNW 60 GKWVSEIREP RKKSRIWLGT FPTPEMAARA HDVAALSVKG SSAILNFPEL ANSLPRPVSL 120 APRDVQAAAA KAAQMERFDS PPSSSSTLSS SSSLSSLVSE MDLSSGSDEL SEIVELPSLG 180 TSYESVELKD EFMFIDSVDG LFYTPPWLQS LEDCRYSFEE NLLWDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-18	46	112	9	76	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625528.1	1e-162	PREDICTED: dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	7e-75	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1U8N5J8	1e-157	A0A1U8N5J8_GOSHI; dehydration-responsive element-binding protein 3
STRING	Gorai.004G289800.1	1e-125	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	8e-70	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]