PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11876_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 406aa MW: 45998.7 Da PI: 4.5352

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11876_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	34.2	5e-11	307	359	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKri.CR..qyGIkRWPhRkiks 51 ke++l dl++y +lp k+AA++Lg++ Tv+ i C G +RWPhRki+s Cotton_A_11876_BGI-A2_v1.0 307 IKEMRLIDLANYLHLPRKEAAQKLGLSETVVHNIwCKgnTGGKRRWPHRKIQS 359 58999************************987698334599******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.672	297	380	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-10	310	359	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MADPNSDLFH DTQYSEEFME IINAAINVTS LELWDTNPFS GETGNKIETN LGGNEIPEPV 60 PLQLPTNDDF PIDIDSLLVD PSENKLENEI PEPVSLKLPT SDEPLDIDSL LGDQTEMNLG 120 NEFHVPFSFP SLEAIVEYNG ETSNQGKINP GFECYCCEIL REIVHFDGGI VTKLQLHGKL 180 VGVLFHAVLD VSQSNQVVSR EVFNFRGKSL LEVKQFLREY CMKREQEGCT MLKDPRSSFF 240 EALCIGFDWY ENPTTKTNLG DIPNNLGQAS VSSTEQVVAT TTNDVGNNNN DNNQKSSISL 300 TEQRKRIKEM RLIDLANYLH LPRKEAAQKL GLSETVVHNI WCKGNTGGKR RWPHRKIQSK 360 VKELMKWREL LSSDDPQVRD RAGVEILLKQ EELAQIYREG LSQYFF

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MADPNSDLFH DTQYSEEFME IINAAINVTS LELWDTNPFS GETGNKIETN LGGNEIPEPV  60
PLQLPTNDDF PIDIDSLLVD PSENKLENEI PEPVSLKLPT SDEPLDIDSL LGDQTEMNLG  120
NEFHVPFSFP SLEAIVEYNG ETSNQGKINP GFECYCCEIL REIVHFDGGI VTKLQLHGKL  180
VGVLFHAVLD VSQSNQVVSR EVFNFRGKSL LEVKQFLREY CMKREQEGCT MLKDPRSSFF  240
EALCIGFDWY ENPTTKTNLG DIPNNLGQAS VSSTEQVVAT TTNDVGNNNN DNNQKSSISL  300
TEQRKRIKEM RLIDLANYLH LPRKEAAQKL GLSETVVHNI WCKGNTGGKR RWPHRKIQSK  360
VKELMKWREL LSSDDPQVRD RAGVEILLKQ EELAQIYREG LSQYFF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614671	2e-75	JX614671.1 Gossypium hirsutum clone NBRI_GE58238 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477293.1	0.0	PREDICTED: uncharacterized protein LOC105792961
TrEMBL	A0A2P5W7J3	0.0	A0A2P5W7J3_GOSBA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42