PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11876_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 406aa    MW: 45998.7 Da    PI: 4.5352
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11876_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK34.25e-11307359251
                      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKri.CR..qyGIkRWPhRkiks 51 
                                  ke++l dl++y +lp k+AA++Lg++ Tv+  i C     G +RWPhRki+s
  Cotton_A_11876_BGI-A2_v1.0 307 IKEMRLIDLANYLHLPRKEAAQKLGLSETVVHNIwCKgnTGGKRRWPHRKIQS 359
                                 58999**************************987698334599********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.672297380IPR003035RWP-RK domain
PfamPF020424.2E-10310359IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MADPNSDLFH DTQYSEEFME IINAAINVTS LELWDTNPFS GETGNKIETN LGGNEIPEPV  60
PLQLPTNDDF PIDIDSLLVD PSENKLENEI PEPVSLKLPT SDEPLDIDSL LGDQTEMNLG  120
NEFHVPFSFP SLEAIVEYNG ETSNQGKINP GFECYCCEIL REIVHFDGGI VTKLQLHGKL  180
VGVLFHAVLD VSQSNQVVSR EVFNFRGKSL LEVKQFLREY CMKREQEGCT MLKDPRSSFF  240
EALCIGFDWY ENPTTKTNLG DIPNNLGQAS VSSTEQVVAT TTNDVGNNNN DNNQKSSISL  300
TEQRKRIKEM RLIDLANYLH LPRKEAAQKL GLSETVVHNI WCKGNTGGKR RWPHRKIQSK  360
VKELMKWREL LSSDDPQVRD RAGVEILLKQ EELAQIYREG LSQYFF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146712e-75JX614671.1 Gossypium hirsutum clone NBRI_GE58238 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477293.10.0PREDICTED: uncharacterized protein LOC105792961
TrEMBLA0A2P5W7J30.0A0A2P5W7J3_GOSBA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342