PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11870_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 141aa    MW: 15405.9 Da    PI: 9.1428
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11870_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-181767155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                s+ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aaka + a  +l+g
  Cotton_A_11870_BGI-A2_v1.0 17 SKYKGVRKRK-WGQWVSEIRLPNS---RERIWLGSYDSAEKAAKAFDVALYCLRG 67
                                89*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-111767IPR001471AP2/ERF domain
CDDcd000186.00E-261775No hitNo description
SuperFamilySSF541716.54E-201776IPR016177DNA-binding domain
SMARTSM003801.0E-301881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-281876IPR001471AP2/ERF domain
PROSITE profilePS5103221.681875IPR001471AP2/ERF domain
PRINTSPR003675.6E-91930IPR001471AP2/ERF domain
PRINTSPR003675.6E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MKPTSPVEHV SNSGSSSKYK GVRKRKWGQW VSEIRLPNSR ERIWLGSYDS AEKAAKAFDV  60
ALYCLRGPEA NFNFPKNPPE VVGGRSFSPS EIRAVAARLA NQVDDQGGAD NNNDNNDSSN  120
DNYARKEQCT SSTSGAVPLQ A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1517751372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625830.11e-100PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-45ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2P5W7M58e-94A0A2P5W7M5_GOSBA; Uncharacterized protein
STRINGGorai.004G285900.11e-74(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]