PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11863_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 202aa    MW: 22479.7 Da    PI: 4.4767
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11863_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.33e-161767155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                s++kG r +k +g+Wv+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  Cotton_A_11863_BGI-A2_v1.0 17 SRFKGARKRK-WGKWVSEIRLPNS---RERIWLGSYDTAEQAARAFDAALFCLRG 67
                                6899999998.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-91767IPR001471AP2/ERF domain
CDDcd000182.97E-281777No hitNo description
SuperFamilySSF541717.85E-201776IPR016177DNA-binding domain
PROSITE profilePS5103221.7991875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-281876IPR001471AP2/ERF domain
SMARTSM003801.5E-301881IPR001471AP2/ERF domain
PRINTSPR003674.6E-91930IPR001471AP2/ERF domain
PRINTSPR003674.6E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVKQNTGRKP ESERPDSRFK GARKRKWGKW VSEIRLPNSR ERIWLGSYDT AEQAARAFDA  60
ALFCLRGRSA KFNFPDNPPD IAGGGSFTHA EIQAVAARFA NSVPPRTHAE EQSTSGFQTE  120
SPSPSVSVET VRVDCELPVD DGSFLDDLTM GSGHYDSGYG LFPGFDDFSS DFTGLLSVPN  180
IDCEEDDNLD WNLNSEPFLW NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1518751472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625863.11e-148PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC27e-56ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2P5WQR81e-143A0A2P5WQR8_GOSBA; Uncharacterized protein
STRINGGorai.004G285200.11e-141(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]