PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11756_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 298aa    MW: 33557 Da    PI: 7.5298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11756_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.4e-181461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd++l+ +++q+G g+W++ + + g+ R++k+c++rw +yl
  Cotton_A_11756_BGI-A2_v1.0 14 KGPWTPEEDQKLLAYIEQHGHGSWRALPLKAGLQRCGKSCRLRWINYL 61
                                79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25564IPR009057Homeodomain-like
PROSITE profilePS5129424.183965IPR017930Myb domain
SuperFamilySSF466891.09E-231197IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002493.7E-161461IPR001005SANT/Myb domain
CDDcd001671.76E-111661No hitNo description
Gene3DG3DSA:1.10.10.609.0E-1365105IPR009057Homeodomain-like
SMARTSM007177.6E-466103IPR001005SANT/Myb domain
PROSITE profilePS512948.52866105IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE QHGHGSWRAL PLKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRTD NEIKNYWNTH LKKRLTKMGI DPVTHKPKTD  120
ALGSTTGNPK DAANLSHMAQ WESARLEAEA RLVRESKLVP SNPPQSNHFT AVAPSPTPAT  180
RPQCLDVLKA WQGVVCGLFT FNMDNNNLQS PTSTLNFMEN TTTLPMSSSS SVNGMFNENF  240
GWNSSINPCE SGDILKVEYG SDQIPELKER LDHPMELHEM DYSSEGTWFQ ELFGFNGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-19121055108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8264650.0EU826465.1 Gossypium hirsutum cultivar Acala Maxxa R2R3 MYB transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639084.10.0PREDICTED: protein ODORANT1-like
RefseqXP_017641552.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9LE631e-98MY106_ARATH; Transcription factor MYB106
TrEMBLC6F0850.0C6F085_GOSHI; R2R3 MYB transcription factor
STRINGGorai.012G186500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-99myb domain protein 16