PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_11632_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 83aa MW: 9679.97 Da PI: 5.8623 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 42.4 | 1.4e-13 | 36 | 75 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+Cn ++s+Clk+YCeCfaag +C++ C Ce+C Nk + Cotton_A_11632_BGI-A2_v1.0 36 ACKHCNRRRSRCLKLYCECFAAGIYCEDCCACENCLNKPD 75 689**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.7E-11 | 35 | 76 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 13.649 | 36 | 83 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.0E-9 | 38 | 73 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MEDSQKVSWL TNYPNPKIAQ KGRGKNRETF PDETEACKHC NRRRSRCLKL YCECFAAGIY 60 CEDCCACENC LNKPDYEEVV LDF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480682.1 | 1e-39 | PREDICTED: uncharacterized protein LOC105795543 isoform X1 | ||||
Refseq | XP_012480684.1 | 8e-40 | PREDICTED: uncharacterized protein LOC105795543 isoform X3 | ||||
Refseq | XP_012480686.1 | 7e-40 | PREDICTED: uncharacterized protein LOC105795543 isoform X5 | ||||
Swissprot | F4JIF5 | 5e-15 | TCX2_ARATH; Protein tesmin/TSO1-like CXC 2 | ||||
Swissprot | Q9LUI3 | 6e-15 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A2P5S5T1 | 4e-42 | A0A2P5S5T1_GOSBA; Uncharacterized protein | ||||
STRING | XP_006465501.1 | 5e-18 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35574 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-17 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
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