PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11632_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 83aa    MW: 9679.97 Da    PI: 5.8623
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11632_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.41.4e-133675241
                         TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                                 +k+Cn ++s+Clk+YCeCfaag +C++ C Ce+C Nk +
  Cotton_A_11632_BGI-A2_v1.0 36 ACKHCNRRRSRCLKLYCECFAAGIYCEDCCACENCLNKPD 75
                                689**********************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.7E-113576IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163413.6493683IPR005172CRC domain
PfamPF036381.0E-93873IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MEDSQKVSWL TNYPNPKIAQ KGRGKNRETF PDETEACKHC NRRRSRCLKL YCECFAAGIY  60
CEDCCACENC LNKPDYEEVV LDF
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480682.11e-39PREDICTED: uncharacterized protein LOC105795543 isoform X1
RefseqXP_012480684.18e-40PREDICTED: uncharacterized protein LOC105795543 isoform X3
RefseqXP_012480686.17e-40PREDICTED: uncharacterized protein LOC105795543 isoform X5
SwissprotF4JIF55e-15TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
SwissprotQ9LUI36e-15TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLA0A2P5S5T14e-42A0A2P5S5T1_GOSBA; Uncharacterized protein
STRINGXP_006465501.15e-18(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3557422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-17TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  3. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  4. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]