PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11628_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 481aa    MW: 54409.4 Da    PI: 8.6829
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11628_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-1856102148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g WT+eEd ll++avk+   ++Wk Ia+ ++ gRt+ qc +rwqk+l
  Cotton_A_11628_BGI-A2_v1.0  56 KGGWTKEEDNLLIEAVKKCNARNWKGIAEFLP-GRTDIQCLHRWQKVL 102
                                 688*****************************.************986 PP
2Myb_DNA-binding57.33.6e-18108154148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g+WT+eEd+ + ++vk++G ++W+ Ia+ +g gR +kqc++rw+++l
  Cotton_A_11628_BGI-A2_v1.0 108 KGPWTKEEDDCITRLVKKFGCRRWAVIAKFVG-GRIGKQCRERWYNHL 154
                                 79******************************.*************97 PP
3Myb_DNA-binding42.61.4e-13160202145
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                 +++W +eE+ +l  +++ +G++ W++ a+ ++ gRt + +k++w+
  Cotton_A_11628_BGI-A2_v1.0 160 KDSWGEEEEAILTYYHQIYGNK-WTKLAELLP-GRTNNAIKNHWN 202
                                 679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.70651102IPR017930Myb domain
SuperFamilySSF466897.18E-1753109IPR009057Homeodomain-like
SMARTSM007172.6E-1655104IPR001005SANT/Myb domain
PfamPF002493.1E-1656102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2458118IPR009057Homeodomain-like
CDDcd001672.49E-1459102No hitNo description
PROSITE profilePS5129427.543103158IPR017930Myb domain
SuperFamilySSF466894.21E-29105201IPR009057Homeodomain-like
SMARTSM007179.9E-17107156IPR001005SANT/Myb domain
PfamPF002491.7E-17108154IPR001005SANT/Myb domain
CDDcd001678.40E-15110154No hitNo description
Gene3DG3DSA:1.10.10.601.3E-24119161IPR009057Homeodomain-like
PROSITE profilePS5129415.634159209IPR017930Myb domain
SMARTSM007171.2E-12159207IPR001005SANT/Myb domain
PfamPF002496.6E-11160202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-19162209IPR009057Homeodomain-like
CDDcd001671.55E-8162202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MVEVKKEKEE YYYEDLIEED RSSASPYSFS SSSFNTITAS PSLQGRVTGP TRWSMKGGWT  60
KEEDNLLIEA VKKCNARNWK GIAEFLPGRT DIQCLHRWQK VLNPGISKGP WTKEEDDCIT  120
RLVKKFGCRR WAVIAKFVGG RIGKQCRERW YNHLDPTIRK DSWGEEEEAI LTYYHQIYGN  180
KWTKLAELLP GRTNNAIKNH WNCTVKKKLD LHSPSRYAKG IDKGSSDFHD RETMPKGMKV  240
KDVRQRFDET KFVNQNVTVD YSAETCNLDL VLGIAGPPEI KLGADPGNVE KYSSPGVSYD  300
QMPVHFNEKG TIDDSIVGSV TRYDKHTWVP EPQPALFRMV SQDGCALLAS TSVGSPSSSL  360
AFNPESKIRR TNTAYSSDCS LHNEPAQREG SISTVFPIVE NGDIHFKSSF CHASPPNKLI  420
GSLSPNSRSL ESILRISAMT FKNTPSIIRK RSYKKGWNDN ISESAASYPV RTFSCFHMEE  480
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-62552096159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-62552096159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640872.10.0PREDICTED: myb-related protein B-like
TrEMBLA0A1U8HNP50.0A0A1U8HNP5_GOSHI; myb-related protein B-like
STRINGGorai.003G160500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2070356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-72myb domain protein 3r-5