PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_11582_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 26205.7 Da PI: 6.1685 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.9e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+ +++ g+ R++k+c++rw +yl Cotton_A_11582_BGI-A2_v1.0 14 RGPWTIEEDHKLMNFIFNNGIPCWRHVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+ E++ +++++ qlG++ W++Ia++++ gRt++++k++w++ Cotton_A_11582_BGI-A2_v1.0 67 RGCFTESEEDEIIRLHSQLGNK-WSKIASHFP-GRTDNEIKNHWNT 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.761 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.79E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-7 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-11 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.95E-5 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.126 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.38E-11 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGRKPCCDKV GLKRGPWTIE EDHKLMNFIF NNGIPCWRHV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGCF TESEEDEIIR LHSQLGNKWS KIASHFPGRT DNEIKNHWNT RIRKKLKLLG 120 LDPVTHKPIE NGEKNKQEET KSEDVRKDDE IQTTLDGTET DDLLNNYEIL CGSLDSSFSK 180 EESNNPSMAT QEEDCLKQWV DCVDSFFSWD NFIHLEEQIP FPWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00510 | DAP | Transfer from AT5G14340 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636329.1 | 1e-166 | PREDICTED: myb-related protein 315-like | ||||
Swissprot | P81394 | 4e-73 | MYB15_ANTMA; Myb-related protein 315 | ||||
TrEMBL | A0A2P5YWV0 | 1e-163 | A0A2P5YWV0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G268000.1 | 1e-162 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 3e-82 | myb domain protein 40 |
Publications ? help Back to Top | |||
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