PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11582_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 224aa    MW: 26205.7 Da    PI: 6.1685
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11582_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.9e-141461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  Cotton_A_11582_BGI-A2_v1.0 14 RGPWTIEEDHKLMNFIFNNGIPCWRHVPKLAGLLRCGKSCRLRWINYL 61
                                89******************************99************97 PP

2Myb_DNA-binding55.81.1e-1767110146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg +T+ E++ +++++ qlG++ W++Ia++++ gRt++++k++w++
  Cotton_A_11582_BGI-A2_v1.0  67 RGCFTESEEDEIIRLHSQLGNK-WSKIASHFP-GRTDNEIKNHWNT 110
                                 899*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.761961IPR017930Myb domain
SuperFamilySSF466894.79E-2811108IPR009057Homeodomain-like
SMARTSM007178.3E-71363IPR001005SANT/Myb domain
PfamPF002491.1E-111461IPR001005SANT/Myb domain
CDDcd001678.95E-51661No hitNo description
PROSITE profilePS5129427.12662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-2665117IPR009057Homeodomain-like
SMARTSM007174.3E-1666114IPR001005SANT/Myb domain
PfamPF002495.4E-1667110IPR001005SANT/Myb domain
CDDcd001675.38E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRKPCCDKV GLKRGPWTIE EDHKLMNFIF NNGIPCWRHV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGCF TESEEDEIIR LHSQLGNKWS KIASHFPGRT DNEIKNHWNT RIRKKLKLLG  120
LDPVTHKPIE NGEKNKQEET KSEDVRKDDE IQTTLDGTET DDLLNNYEIL CGSLDSSFSK  180
EESNNPSMAT QEEDCLKQWV DCVDSFFSWD NFIHLEEQIP FPWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636329.11e-166PREDICTED: myb-related protein 315-like
SwissprotP813944e-73MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A2P5YWV01e-163A0A2P5YWV0_GOSBA; Uncharacterized protein
STRINGGorai.001G268000.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-82myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]