PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_11430_BGI-A2_v1.0 | ||||||||
Common Name | F383_23720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YC | ||||||||
Protein Properties | Length: 208aa MW: 24345 Da PI: 6.4351 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 136.8 | 6.2e-43 | 65 | 165 | 2 | 98 |
NF-YC 2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdia 80 l+ fw +q i + + fk +h+lPlarik+i+k+d+dvkmisa++P+l+skacelfileltlr+wlh+ee kr tl+++d++ Cotton_A_11430_BGI-A2_v1.0 65 LELFWYQQmleIHNISAFKsHHQLPLARIKRIMKSDKDVKMISADTPILFSKACELFILELTLRAWLHTEEDKRGTLQRCDVS 147 789****966667778899889************************************************************* PP NF-YC 81 aavtrtdifdflvdivpr 98 +a+ + + fl d+vp Cotton_A_11430_BGI-A2_v1.0 148 KAIRQEEALHFLFDVVPL 165 ****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.53E-26 | 68 | 160 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.6E-32 | 83 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-18 | 87 | 150 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MNRPTLERLT MDLNQSMEFT PSATSSPQIH NFMPMTSFML PFHQPSNEDG EEVKQSHLLV 60 QKRSLELFWY QQMLEIHNIS AFKSHHQLPL ARIKRIMKSD KDVKMISADT PILFSKACEL 120 FILELTLRAW LHTEEDKRGT LQRCDVSKAI RQEEALHFLF DVVPLINHKD DDGKFLEENE 180 HHSVNQPQFP LLDMNAELVI KLQKLNNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-33 | 72 | 164 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636742.1 | 1e-151 | PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X1 | ||||
TrEMBL | A0A0B0MK63 | 1e-148 | A0A0B0MK63_GOSAR; Nuclear transcription factor Y subunit C-2-like protein | ||||
STRING | Gorai.008G057500.1 | 1e-130 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18090 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 4e-40 | nuclear factor Y, subunit C2 |