PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_11417_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GeBP | ||||||||
Protein Properties | Length: 177aa MW: 19928.7 Da PI: 9.2713 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 38.4 | 3.5e-12 | 2 | 53 | 46 | 97 |
DUF573 46 sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 s ++ksql+eK+rrL+kKf +++ ++g +ps + hd+ f+lsk++W Cotton_A_11417_BGI-A2_v1.0 2 SQPYTKSQLSEKLRRLRKKFGVVSSRLARGLNPSSLSLHDRALFDLSKRLWS 53 67899**********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.6E-13 | 2 | 53 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSQPYTKSQL SEKLRRLRKK FGVVSSRLAR GLNPSSLSLH DRALFDLSKR LWSPEFASSS 60 PFGKNSSGFN GVAGNGFDDC DTIDDDGEVK INGVSLHYDF AAGRDEVTSR ETIDGVLAKG 120 VLNAFDECLK EVRMMFMKPG VVCMDTTERK WKEQRVSEFD VLGRRLRLVI ENSLTRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578058 | 1e-160 | JX578058.1 Gossypium hirsutum clone NBRI_GE9999 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017634569.1 | 1e-128 | PREDICTED: uncharacterized protein LOC108476763 | ||||
TrEMBL | A0A1U8KLI5 | 1e-125 | A0A1U8KLI5_GOSHI; sorbin and SH3 domain-containing protein 2-like | ||||
STRING | Gorai.008G058900.1 | 1e-110 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18042 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 6e-08 | DNA-binding storekeeper protein-related transcriptional regulator |