PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_11313_BGI-A2_v1.0 | ||||||||
Common Name | F383_05648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 36105.8 Da PI: 9.5137 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.3 | 7.6e-33 | 68 | 208 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 lp+G++F+Ptd+e++ e+L++kv ++ l + +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+ Cotton_A_11313_BGI-A2_v1.0 68 LPAGVKFDPTDQEIL-EHLEAKVISDLrklhplL---DefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGT 145 799***********9.899999876664664432...222222333336**********.555666777************** PP NAM 73 rknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 rk+r+++ + +W++tgk+++v + +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Cotton_A_11313_BGI-A2_v1.0 146 RKRRKVHtdeegsETRWHKTGKTRAVSV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 208 ****744446555778***********9.9*************66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-37 | 63 | 227 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.874 | 68 | 227 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-15 | 69 | 208 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MTWCNNPDDD ARAIKLVATA TKEPSLAVAA TSAASYTKIH EIQTIICPSC GFNIPYQDQT 60 GIHDLPGLPA GVKFDPTDQE ILEHLEAKVI SDLRKLHPLL DEFIPTLEGE NGICYTHPEK 120 LPGVSKDGQI RHFFHRPSKA YTTGTRKRRK VHTDEEGSET RWHKTGKTRA VSVGGAVKGF 180 KKILVLYTNY GRQRKPEKTN WVMHQYHLGN NEEEKDGELV ISKVFYQTQP RQCGPSSVKY 240 TLDRKLKTRS RLHQNPNPMA KSSGSRGLVE YNNPPFIPYD DGSHHNRESP PQLIPNLVVQ 300 GDGSSFIRLT SDTSKGRVER K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00165 | DAP | Transfer from AT1G28470 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847204 | 0.0 | KC847204.1 Gossypium hirsutum NAC domain protein NAC27 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017603229.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | F4HY61 | 1e-117 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | A0A0B0PIN9 | 0.0 | A0A0B0PIN9_GOSAR; NAC domain-containing 8-like protein | ||||
STRING | Gorai.009G166300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 1e-120 | NAC domain containing protein 10 |