PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11305_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 264aa    MW: 29707.4 Da    PI: 6.6281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11305_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-19118167254
                         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                                 +y+GVr+++ +g+++AeIrd      k +r +lg+f+taeeAa a+++a+++++
  Cotton_A_11305_BGI-A2_v1.0 118 HYRGVRRRP-WGKYAAEIRDS---SrKGARLWLGTFDTAEEAAMAYDKAALRIR 167
                                 7********.**********3...2234**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-31117177IPR001471AP2/ERF domain
PROSITE profilePS5103223.261118176IPR001471AP2/ERF domain
PfamPF008479.9E-14118167IPR001471AP2/ERF domain
CDDcd000183.91E-28118176No hitNo description
SuperFamilySSF541711.9E-22118177IPR016177DNA-binding domain
SMARTSM003802.3E-36118182IPR001471AP2/ERF domain
PRINTSPR003673.7E-11119130IPR001471AP2/ERF domain
PRINTSPR003673.7E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAVESSHHAA ADESILENVW ANFIGGEEGD KARKPSFGSW EELPSLDGRD GSMEILQRLP  60
SLGRWISMGA DAWEDLLHGI IPPGNIPQSC NNVTANDIIS TRGHKANSMR LEKLATRHYR  120
GVRRRPWGKY AAEIRDSSRK GARLWLGTFD TAEEAAMAYD KAALRIRCPR ANLNFPLHTV  180
AKAMGIDDTK TNFNRCLSAT NGQGTKDFTD HRKRECRAWE QNSEVVMVEQ PQLKRMASIE  240
ECGYDVFWFQ DLGSDYLESL LSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26117179466ATERF1
3gcc_A5e-26117179466ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5822121e-63JX582212.1 Gossypium hirsutum clone NBRI_GE15002 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604216.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A1U8MYZ80.0A0A1U8MYZ8_GOSHI; ethylene-responsive transcription factor ERF091-like
STRINGGorai.009G165400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.16e-35ERF family protein