PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_11262_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 188aa MW: 21139.7 Da PI: 7.3765 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.2 | 9.4e-30 | 101 | 158 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYG+K++k++++pr+YY+C+s gC+vkk++er+ +d+++v++tYeg Hnhe Cotton_A_11262_BGI-A2_v1.0 101 DDGYKWRKYGKKSIKDNPNPRNYYKCSSVGCNVKKRIERDVKDQSYVVTTYEGVHNHE 158 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.1E-31 | 88 | 160 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-27 | 93 | 160 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.63 | 95 | 160 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.8E-32 | 100 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-22 | 101 | 158 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDFSHQNPNS NPIYTFFPES VNPMPDFEVS DYLLLDGSIF DDDTSSQSML SSEKGMAAAT 60 ELSGATSKNC NIKCKNGVGK NKSELGVRVA FRMKSEMEVI DDGYKWRKYG KKSIKDNPNP 120 RNYYKCSSVG CNVKKRIERD VKDQSYVVTT YEGVHNHETP SMVYYNQMSI MAPNAWTFQA 180 SLPSSSST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-25 | 90 | 161 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-25 | 90 | 161 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669806 | 1e-101 | KF669806.1 Gossypium hirsutum WRKY transcription factor 20 (WRKY20) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017622476.1 | 1e-140 | PREDICTED: probable WRKY transcription factor 51 | ||||
Swissprot | Q93WU9 | 2e-44 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A1U8NW10 | 1e-136 | A0A1U8NW10_GOSHI; probable WRKY transcription factor 51 | ||||
STRING | Gorai.003G047800.1 | 1e-130 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5711 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 9e-47 | WRKY DNA-binding protein 51 |
Publications ? help Back to Top | |||
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