PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11210_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family EIL
Protein Properties Length: 505aa    MW: 57317.6 Da    PI: 4.8096
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11210_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3415.17.7e-127333601353
                                 XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                        EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkp 83 
                                 eelkkrmwkd+ +++rlke ++++  d+       +s  ++e++rrkkmsraQD+iLkYM+k+mevc+aqGfvYgi+pekgkp
  Cotton_A_11210_BGI-A2_v1.0  33 EELKKRMWKDRLRMQRLKETRESSRSDH-------QSGVRQEASRRKKMSRAQDSILKYMVKIMEVCKAQGFVYGIVPEKGKP 108
                                 8*****************9999865333.......445679****************************************** PP

                                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT CS
                        EIN3  84 vegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplek 166
                                 v+g+sdsLr+WWkekv+fd+ +p a+ +     +i++ + +l  ++ s  h l++lqDTtlgSLLsalmqhc ppqrrfple+
  Cotton_A_11210_BGI-A2_v1.0 109 VTGSSDSLRKWWKEKVQFDKSAPLAVDEFL--PIIAE-QGEL--DPVSCMHLLHDLQDTTLGSLLSALMQHCAPPQRRFPLER 186
                                 *************************98773..34444.4444..689************************************ PP

                                 --HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHH CS
                        EIN3 167 gvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsv 249
                                 g++pPWWPtG+elwwge+g+s++qg+ppy+kphdlkkawkvsvL+avikhmsp+i++ir+l+ qsk+lqdkm+a+++ ++++v
  Cotton_A_11210_BGI-A2_v1.0 187 GLAPPWWPTGNELWWGEQGMSQEQGPPPYRKPHDLKKAWKVSVLAAVIKHMSPNIDRIRRLVTQSKCLQDKMTARDTVTWSKV 269
                                 *********************************************************************************** PP

                                 HTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXX CS
                        EIN3 250 lnqeekecatvsahssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqss 332
                                 +nqee++++            ++ +++s  ++++ e+++e + ++ + ++  ++++v  +++ k   +++v  +  ++ cq+s
  Cotton_A_11210_BGI-A2_v1.0 270 VNQEEALLK----------LTEKCLKISPTKDDEEEQDSEYSLAADEGKH-GEKITVSGEKR-KCLFKRQVTPNT-IYACQNS 339
                                 *****9772..........3566778888877777777777755444444.46667776666.677777777775.6****** PP

                                 XXXX.XXXXXXXXXXXXXXXX CS
                        EIN3 333 qfrgsetelifadknsisqne 353
                                  +++s  el+f+ kn +s++e
  Cotton_A_11210_BGI-A2_v1.0 340 MCPRSALELGFTGKNTRSDHE 360
                                 ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.3E-11733274No hitNo description
Gene3DG3DSA:1.10.3180.103.2E-69150278IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.26E-60153277IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MVEILGEIEP PSPVYEAELP EEDEEQEEEI SYEELKKRMW KDRLRMQRLK ETRESSRSDH  60
QSGVRQEASR RKKMSRAQDS ILKYMVKIME VCKAQGFVYG IVPEKGKPVT GSSDSLRKWW  120
KEKVQFDKSA PLAVDEFLPI IAEQGELDPV SCMHLLHDLQ DTTLGSLLSA LMQHCAPPQR  180
RFPLERGLAP PWWPTGNELW WGEQGMSQEQ GPPPYRKPHD LKKAWKVSVL AAVIKHMSPN  240
IDRIRRLVTQ SKCLQDKMTA RDTVTWSKVV NQEEALLKLT EKCLKISPTK DDEEEQDSEY  300
SLAADEGKHG EKITVSGEKR KCLFKRQVTP NTIYACQNSM CPRSALELGF TGKNTRSDHE  360
SSCSYRSKES DVSQESSEES EFSNRNLAPY DHHSFGPQAK LNTDSLGDAQ KVLAVTDWLD  420
MELAKANDQH RNMQSDEVGD ISGTVSQDYI NYLGGAIEDL PVPAEFLLQL GDMDLDPSLP  480
LLLENIQEQG LTSIWDMGFD GISES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A3e-601512781128Protein ETHYLENE INSENSITIVE 3
4zds_B3e-601512781128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619654.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-140EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A1U8NWF30.0A0A1U8NWF3_GOSHI; putative ETHYLENE INSENSITIVE 3-like 4 protein
STRINGGorai.003G043500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-134EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]