PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11168_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 606aa MW: 65374.8 Da PI: 8.0401

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11168_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44	4.4e-14	200	236	1	37
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCk 37 k++kgC+Ck+s Cl+kYCeCf+a+ Cse+CkC +Ck Cotton_A_11168_BGI-A2_v1.0 200 KHSKGCHCKRSGCLRKYCECFQANILCSESCKCMGCK 236 589*********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	26.942	120	240	IPR005172	CRC domain
SMART	SM01114	4.5E-14	200	239	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	9.1E-11	203	236	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence Send to blast
MESDRLLEED EDWGNLDISR SLGTYWNLNG GRKRRPIPAK KNVQSDSADF PEKKLARQLH 60 FTAAFGGISA AAVVFPENPQ SKQGMDVASW SPAAASVNQR QQPQIKQQVA ATISVAAGQS 120 HPLTTASSSV VYCECFASGM YCDECNCVNC YKNVEYEAVR RDSVGATLKS NLNAFRPKIN 180 SSSHGAKDNK EAGEVLMLGK HSKGCHCKRS GCLRKYCECF QANILCSESC KCMGCKKFKG 240 SEERQALFHG DYANNMAYIQ QAANATTTGA IGSSGYASAP VSKKRKSQEL LLGSTAKDPS 300 VHSLGHLQQT NLIRASIPSS SLSSMSVSRA GTAVGPSKLS YRSLFADIIQ KQDLKELCSV 360 LVVLSREAAK ILADQRSLIE GAEDHSEISL ASSTQDKLES QKDFVAEKTR ADNCSSANQA 420 VKSGPENSCT DVADMPEGRP MSPATLALMC DEQDTTFTAA ASLNGIMDDG YSTSSQLPCG 480 KGMIQIDAEH ERVVLTKFRD CLNRLITFGE IKGNGNLTML LLPITRMQCS TLARIEIGSQ 540 RCPLSHRAET GNQQGFVNYG VPKTFFSPTV RTSKTDAVVT TADNDLPTVP PFPGNGDAKS 600 KPAKQM

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence Send to blast

MESDRLLEED EDWGNLDISR SLGTYWNLNG GRKRRPIPAK KNVQSDSADF PEKKLARQLH  60
FTAAFGGISA AAVVFPENPQ SKQGMDVASW SPAAASVNQR QQPQIKQQVA ATISVAAGQS  120
HPLTTASSSV VYCECFASGM YCDECNCVNC YKNVEYEAVR RDSVGATLKS NLNAFRPKIN  180
SSSHGAKDNK EAGEVLMLGK HSKGCHCKRS GCLRKYCECF QANILCSESC KCMGCKKFKG  240
SEERQALFHG DYANNMAYIQ QAANATTTGA IGSSGYASAP VSKKRKSQEL LLGSTAKDPS  300
VHSLGHLQQT NLIRASIPSS SLSSMSVSRA GTAVGPSKLS YRSLFADIIQ KQDLKELCSV  360
LVVLSREAAK ILADQRSLIE GAEDHSEISL ASSTQDKLES QKDFVAEKTR ADNCSSANQA  420
VKSGPENSCT DVADMPEGRP MSPATLALMC DEQDTTFTAA ASLNGIMDDG YSTSSQLPCG  480
KGMIQIDAEH ERVVLTKFRD CLNRLITFGE IKGNGNLTML LLPITRMQCS TLARIEIGSQ  540
RCPLSHRAET GNQQGFVNYG VPKTFFSPTV RTSKTDAVVT TADNDLPTVP PFPGNGDAKS  600
KPAKQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-23	131	249	24	132	Protein lin-54 homolog
5fd3_B	2e-23	131	249	24	132	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016689961.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
Swissprot	Q9SZD1	1e-142	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A1U8JI61	0.0	A0A1U8JI61_GOSHI; protein tesmin/TSO1-like CXC 5 isoform X2
STRING	Gorai.009G025900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1783	28	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-141	Tesmin/TSO1-like CXC domain-containing protein