PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11156_BGI-A2_v1.0
Common NameF383_35995
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 349aa    MW: 39753 Da    PI: 6.5351
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11156_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.41.1e-33121042103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 F+ k+y++++d+ ++++i+w + +nsf+v+d+  f++++Lp yFkhsnf+SFvRQLn+YgFkkv+ ++         weF+++
  Cotton_A_11156_BGI-A2_v1.0  12 FVVKTYQMVNDPMTNTVITWGKANNSFIVIDHLVFTQRILPVYFKHSNFSSFVRQLNTYGFKKVDPDK---------WEFAND 85 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                 +F +gk +ll++i r+k++
  Cotton_A_11156_BGI-A2_v1.0  86 WFLRGKMHLLKNIVRRKHN 104
                                 ***************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.1E-488101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-329101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-349101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-2812101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEGNNTNIVA PFVVKTYQMV NDPMTNTVIT WGKANNSFIV IDHLVFTQRI LPVYFKHSNF  60
SSFVRQLNTY GFKKVDPDKW EFANDWFLRG KMHLLKNIVR RKHNKNLNRQ VKAEGLNEEE  120
EEEEDIVMEI AKLKEEQKSL EEEIKGMNKR LEATERRPQQ MMAFLYKVVE DPDLLPRMLL  180
EKERKRQLNP DKKRRLITVM PSSAQSSSSS LAVSSNSVKS EEEDECHAGT ISSLETGYDI  240
GNNRFRYSSY QSSPSPEDSK ELLGHINKQF VGQFMNYGCA TVTRQLPSVI VAPSVIVNGL  300
TVSSSSVTSS KAGYGDRNEQ VGYFGELVAE EMEARPPLPY PFSLLEGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-21910126129Heat shock factor protein 1
5d5v_B3e-21910126129Heat shock factor protein 1
5d5v_D3e-21910126129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674080.0KR067408.1 Gossypium hirsutum HSF27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609786.10.0PREDICTED: heat stress transcription factor C-1
TrEMBLA0A0B0PU370.0A0A0B0PU37_GOSAR; Heat stress transcription factor C-1-like protein
STRINGGorai.009G024700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.17e-78heat shock transcription factor C1