PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11048_BGI-A2_v1.0
Common NameF383_19897
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 814aa    MW: 89881.6 Da    PI: 7.103
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11048_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23176277199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                 f+k+lt sd++ +g ++ p++ ae++      ++++ s++l+++d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD
  Cotton_A_11048_BGI-A2_v1.0 176 FCKTLTASDTSIHGGFSAPRRAAEDCfprldYKQTRPSQELVVKDLHGVEWRFRHIYRGQPRRHLLTTGWSVFVSQKNLIAGD 258
                                 99****************************8444556789******************************************* PP

                                 EEEEEE-SSSEE..EEEEE-S CS
                          B3  79 fvvFkldgrsefelvvkvfrk 99 
                                  v+F   + +++el+++++r+
  Cotton_A_11048_BGI-A2_v1.0 259 AVLFL--RGEDGELRLGIRRA 277
                                 *****..449999*****996 PP
2Auxin_resp114.11.3e-37302383182
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                 +a+a+stksvF+v+Y+Pras++eFv++++k+ k+++++++ G Rf+m+ e++d +err+ G+v+g+ d+dp++WpnSkWr+L
  Cotton_A_11048_BGI-A2_v1.0 302 VANALSTKSVFQVCYCPRASHAEFVIPFQKYIKSITNPMCTGARFRMKCEMDDLPERRCNGVVTGIGDSDPYKWPNSKWRCL 383
                                 689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-39167287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-42168289IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-22174276No hitNo description
PfamPF023621.2E-21176277IPR003340B3 DNA binding domain
SMARTSM010194.2E-22176278IPR003340B3 DNA binding domain
PROSITE profilePS5086312.76176278IPR003340B3 DNA binding domain
PfamPF065074.6E-31302383IPR010525Auxin response factor
SuperFamilySSF542778.5E-10675758No hitNo description
PfamPF023092.4E-6675764IPR033389AUX/IAA domain
PROSITE profilePS5174520.708679761IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MEIDLNHALN EVEKTVLCNG SCEKASACVY CLSSSSSSSS SSSSSSSSTS CTSNSGSPPC  60
SSSIDLELWH ACAGPLTSLP KKGNVVVYFP QGHLEQLALA FPFSPLDTFD LPSQIFCKVM  120
NVQLLANKEN DEVYTQVTLL PQPELRGHNL GSKQLDEVEA DEHADGSPSK PTSHMFCKTL  180
TASDTSIHGG FSAPRRAAED CFPRLDYKQT RPSQELVVKD LHGVEWRFRH IYRGQPRRHL  240
LTTGWSVFVS QKNLIAGDAV LFLRGEDGEL RLGIRRAVRP RTGLPDSIIA QHNSYPKVLS  300
AVANALSTKS VFQVCYCPRA SHAEFVIPFQ KYIKSITNPM CTGARFRMKC EMDDLPERRC  360
NGVVTGIGDS DPYKWPNSKW RCLMVRWDDD IASDHQERVS PWEIDPSVFP PPLIIPSPFK  420
LKKLRTGLQT AALDTPVTGG VGYLDFEEST RSSKVLQGQE NVGFISPVYG CGTVNHPLHF  480
EMQSMAHQSL ASTGLGKSNI SDFMRAHSSS HTGFAETNRF PKVLQGQEIC SLRSLTHKAD  540
LNLGVWAKTN HGCNSFNMNQ APNTNFYPEG LRNIYFPYNE FYRAGQEPKM CSYASTLPRG  600
NVLFNASSIK PGVSVDDIRK PNPPNDHKPM ENIPSPGFGK KLRNQQDECY KGNVSGCKLF  660
GFSLTAESPT LNSQNSGKRS CTKVHKQGSL VGRAIDLSRL YGYKDLITEL EHLFGMEGLL  720
SAPDKGWRVL YTDRDNDVMV VGDDPWHEFC DVVSKIHIYT GEEVEKMTIG MGSDETQSCL  780
EEAAVIMEAS KSSSVGQPDS SPTVMRGMKI SACF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-117544067354Auxin response factor 1
4ldy_B1e-117544067354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6277720.0KJ627772.1 Gossypium hirsutum auxin responsive factor ARF5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603398.10.0PREDICTED: auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A1U8PHR30.0A0A1U8PHR3_GOSHI; Auxin response factor
STRINGGorai.009G078800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95302636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]