PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_11012_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 341aa MW: 36315.3 Da PI: 8.8545 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 206 | 1e-63 | 130 | 293 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskk 82 s +a+CqdCGnqakkdC ++RCRtCCksr+fdC thvkstWvpaa+rr+rq ++ a++ a + ++a +k++r +s + Cotton_A_11012_BGI-A2_v1.0 130 SSGATCQDCGNQAKKDCRYRRCRTCCKSRSFDCPTHVKSTWVPAARRRDRQLMTVGATAAGAGAGlsgSSAGPKKPRLRTS-Q 211 56789*********************************************9988777766555445667888888887755.5 PP DUF702 83 qsalsstklss.aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++s+t++s+ ++++++l+t s +P++v+++avf+cvrv+++++ge+e+aY+++v+igGhvfkG+LydqG++ Cotton_A_11012_BGI-A2_v1.0 212 TTTASHTSTSNaTTPPRSLDTCSspqnaefkepFPAQVRATAVFKCVRVTAIEEGEDEFAYEAVVKIGGHVFKGLLYDQGVD 293 55555555555155678888888899******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-60 | 132 | 293 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.0E-27 | 134 | 176 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.5E-26 | 245 | 292 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MGMVGLRDFV LVTPASFNHH HRHHHTQDSI MANDQINGPN DLTALGVGVI PLLTTAPCLA 60 PHHAEDTDLL NNNDRSKFTG MQLWQNPNSS HYLKKSSKNP NNHNSSSMNL IQSSGGIGGT 120 ESRSGGSGSS SGATCQDCGN QAKKDCRYRR CRTCCKSRSF DCPTHVKSTW VPAARRRDRQ 180 LMTVGATAAG AGAGLSGSSA GPKKPRLRTS QTTTASHTST SNATTPPRSL DTCSSPQNAE 240 FKEPFPAQVR ATAVFKCVRV TAIEEGEDEF AYEAVVKIGG HVFKGLLYDQ GVDGFPNISQ 300 LHLSGRNGES SSSPVLDPSQ VYEATTGGGL LRGSNYGSAR N |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605684.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 3e-79 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A1U8JKT3 | 0.0 | A0A1U8JKT3_GOSHI; protein LATERAL ROOT PRIMORDIUM 1-like | ||||
TrEMBL | A0A2P5RGH8 | 0.0 | A0A2P5RGH8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G075300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5883 | 26 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12330.2 | 3e-72 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
---|---|---|---|
|