PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_11012_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 341aa    MW: 36315.3 Da    PI: 8.8545
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_11012_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022061e-631302933153
                      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskk 82 
                                 s +a+CqdCGnqakkdC ++RCRtCCksr+fdC thvkstWvpaa+rr+rq ++  a++  a +    ++a +k++r  +s +
  Cotton_A_11012_BGI-A2_v1.0 130 SSGATCQDCGNQAKKDCRYRRCRTCCKSRSFDCPTHVKSTWVPAARRRDRQLMTVGATAAGAGAGlsgSSAGPKKPRLRTS-Q 211
                                 56789*********************************************9988777766555445667888888887755.5 PP

                      DUF702  83 qsalsstklss.aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                 ++++s+t++s+ ++++++l+t s          +P++v+++avf+cvrv+++++ge+e+aY+++v+igGhvfkG+LydqG++
  Cotton_A_11012_BGI-A2_v1.0 212 TTTASHTSTSNaTTPPRSLDTCSspqnaefkepFPAQVRATAVFKCVRVTAIEEGEDEFAYEAVVKIGGHVFKGLLYDQGVD 293
                                 55555555555155678888888899******************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-60132293IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.0E-27134176IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.5E-26245292IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGMVGLRDFV LVTPASFNHH HRHHHTQDSI MANDQINGPN DLTALGVGVI PLLTTAPCLA  60
PHHAEDTDLL NNNDRSKFTG MQLWQNPNSS HYLKKSSKNP NNHNSSSMNL IQSSGGIGGT  120
ESRSGGSGSS SGATCQDCGN QAKKDCRYRR CRTCCKSRSF DCPTHVKSTW VPAARRRDRQ  180
LMTVGATAAG AGAGLSGSSA GPKKPRLRTS QTTTASHTST SNATTPPRSL DTCSSPQNAE  240
FKEPFPAQVR ATAVFKCVRV TAIEEGEDEF AYEAVVKIGG HVFKGLLYDQ GVDGFPNISQ  300
LHLSGRNGES SSSPVLDPSQ VYEATTGGGL LRGSNYGSAR N
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605684.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK93e-79LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A1U8JKT30.0A0A1U8JKT3_GOSHI; protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A2P5RGH80.0A0A2P5RGH8_GOSBA; Uncharacterized protein
STRINGGorai.009G075300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-72Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]