PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10947_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 338aa    MW: 35365.3 Da    PI: 9.539
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10947_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1172.4e-36691663103
                         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 
                                 +k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++    +   +  +
  Cotton_A_10947_BGI-A2_v1.0  69 PKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPT 149
                                 799************************************************************7777744421..11111111 PP

                         TCP  85 sssgkaaksaakskksqks 103
                                  s  +a+++   ++k++++
  Cotton_A_10947_BGI-A2_v1.0 150 TS--NANPEPGDPSKKKHK 166
                                 11..111222211111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-2973162IPR005333Transcription factor, TCP
PROSITE profilePS5136926.42174128IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAAIHKLEAE EDADPRAVVL SISGGGDAAP SKNPKEEPDI DTTLGAMPVA VHVPSGVPVP  60
PVTAAPAGPK RASTKDRHTK VEGRGRRIRI PATCAARIFQ LTRELGHKSD GETIRWLLEH  120
AEPAIIAATG TGTVPAIAMS VNGTLKIPTT SNANPEPGDP SKKKHKRPAN SEYVDINDAV  180
SVSSGLAPVI TPQQQQQQQA AVLPQGLVPI WAIPSNTVVP GAFFMVPPMA SMAGPSTQPH  240
IFTFPATATP VINISARPIS SFVSALQAAT PSQLQSNVAV TSCTVPVSKA AKTTSVMAPS  300
SSSAASATTT TTTQMLRDFS LEIYDKQELQ FMTRSSKH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630785.10.0PREDICTED: transcription factor TCP9
SwissprotO646473e-96TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A2P5WWM80.0A0A2P5WWM8_GOSBA; Uncharacterized protein
STRINGGorai.007G094200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-88TCP family protein