PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_10833_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 175aa MW: 20213.8 Da PI: 8.6802

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_10833_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.9	1.6e-11	66	113	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 ++ rr+++NRe+ArrsR RK++ +e+L++ v L+ eN++L ++l Cotton_A_10833_BGI-A2_v1.0 66 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRLKLENRELTNQLRLV 113 5789*************************************9887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-13	62	126	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.1E-10	63	112	No hit	No description
PROSITE profile	PS50217	10.852	64	110	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.16E-11	66	114	No hit	No description
Pfam	PF00170	1.3E-8	66	111	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.25E-20	67	118	No hit	No description
PROSITE pattern	PS00036	0	69	84	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MFDNDQYLAL ESGFTPWDCS ELLSISQTIE PAILGSVSDE PLQGHTNSNS GSDEPNQPDS 60 SVIDERKRRR MISNRESARR SRMRKQKHLE NLRNQVNRLK LENRELTNQL RLVLCHCHRV 120 ATDNNRLRSE HSILRRKLSD THQILLLKQL QQFSSAWPCN NVATVMSDQT PPLIT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	69	RKRRR
2	65	86	RKRRRMISNRESARRSRMRKQK
3	78	85	RRSRMRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636927.1	1e-126	PREDICTED: bZIP transcription factor 2-like
TrEMBL	A0A2P5XX71	1e-124	A0A2P5XX71_GOSBA; Uncharacterized protein
STRING	Gorai.007G056900.1	1e-112	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22850.2	2e-35	basic leucine-zipper 6