PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10774_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 278aa    MW: 30387.9 Da    PI: 5.4717
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10774_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20121170255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  Cotton_A_10774_BGI-A2_v1.0 121 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFNTAEEAARAYDKAAIDFRG 170
                                 59*******.**********82....48**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-34120178No hitNo description
SuperFamilySSF541718.5E-23121179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-33121178IPR001471AP2/ERF domain
SMARTSM003806.9E-40121184IPR001471AP2/ERF domain
PfamPF008472.2E-14121170IPR001471AP2/ERF domain
PROSITE profilePS5103225.146121178IPR001471AP2/ERF domain
PRINTSPR003672.6E-12122133IPR001471AP2/ERF domain
PRINTSPR003672.6E-12144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPPPPPPLNP LSSEQEISVM VSTLKNVITG STPSSSSADL RFDFDAPGGS ASTFTGGFNA  60
DRGNMVFQVS EVLDKCHVCK FDGCLGCNLF PPSQQEEKKG TTSATTTTSA LKTKTKRVKK  120
NYRGVRQRPW GKWAAEIRDP RRATRVWLGT FNTAEEAARA YDKAAIDFRG PRAKLNFPFP  180
DSNSNADVIP PPPAAATSMG FDHEISSRSS NVQKEKERND VIGMEMDTEK GLGSTEFWDA  240
IGEDEIQQWM MMMSEFGGDS YSSDSATITV TTGNVRSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23120179161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7139090.0KC713909.1 Gossypium hirsutum ethylene-responsive transcription factor 10 (ERF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636867.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLR9W3D10.0R9W3D1_GOSHI; Ethylene-responsive transcription factor 10
STRINGGorai.008G025100.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-33redox responsive transcription factor 1