PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_10669_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 320aa MW: 36168.3 Da PI: 4.4678 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28 | 3.7e-09 | 250 | 282 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ Cotton_A_10669_BGI-A2_v1.0 250 PYPTEEEKLKLSEMTGLDQKQINNWFINQRKRH 282 8*****************************885 PP | |||||||
2 | ELK | 37 | 7e-13 | 202 | 223 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ++K +L+rKYsgyL+sL++EF+ Cotton_A_10669_BGI-A2_v1.0 202 DIKGMLMRKYSGYLSSLRKEFL 223 58*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 6.2E-21 | 62 | 106 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.7E-20 | 64 | 105 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.9E-26 | 109 | 160 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.8E-25 | 112 | 159 | IPR005541 | KNOX2 |
SMART | SM01188 | 2.4E-6 | 202 | 223 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.58 | 202 | 222 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.1E-9 | 202 | 223 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.066 | 222 | 285 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.82E-19 | 224 | 292 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.8E-12 | 224 | 289 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.07E-15 | 225 | 286 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-26 | 227 | 287 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.9E-17 | 242 | 281 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 260 | 283 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEDIYRLDDT VIACSNDVVR VNDFAAAVTT DFLSTPVDDH HLLQFDHQET DTGVTGSSAM 60 SDLIKTQIAT HPLYPNLVSA YIECQKVGAP PELASLLEEI DRESHTISGC GEIGADPELD 120 EFMESYCEVL HRYKEELSKP FDEATTFLTN IESQLSDLCK GALTMDYRTD EGAESSDGEL 180 SGGELVEACE SQEWHGGRRS QDIKGMLMRK YSGYLSSLRK EFLKKRKNGK LPKDARLTLL 240 DWWNNHYRWP YPTEEEKLKL SEMTGLDQKQ INNWFINQRK RHWKPSEDMK FALMEDVAGS 300 IRGGPTYFDT GAGIGTADDI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 226 | LRKEFLKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ281773 | 2e-32 | GQ281773.1 Prunus persica class I KNOX homeobox transcription factor KNOPE6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628863.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 2e-96 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A2P5VVM5 | 0.0 | A0A2P5VVM5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G306500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70510.1 | 2e-92 | KNOTTED-like from Arabidopsis thaliana 2 |
Publications ? help Back to Top | |||
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