PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_10525_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 306aa MW: 34491.5 Da PI: 9.3736

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_10525_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30	1.1e-09	235	281	5	49
CHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaLkkel 49 +r rrk+kNRe+A rsR+RK+a + eL +kv Le+ N +Lk e Cotton_A_10525_BGI-A2_v1.0 235 RRLRRKIKNRESAARSRARKQAraYHNELVNKVSRLEEDNLKLKREK 281 5889**************97225689**********9999774 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0023	231	300	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.8E-8	235	282	No hit	No description
Pfam	PF00170	6.0E-8	235	282	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.94E-15	235	291	No hit	No description
SuperFamily	SSF57959	1.59E-6	235	284	No hit	No description
PROSITE pattern	PS00036	0	238	253	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGIQTMGSQS NGQQSLLQPS PLVRQNSWYS LTLNEVENQL GNLGKPLGSM NLDELLDNVW 60 STELNPPLGM NNTESISSSS SSLQRQASLT LARALSGKTV DQVWSEIQQG QKRRYGEGMK 120 DQEREAKLGE TTLEDFLVQA GLFVAETSLD PTMEFDNTRQ QSLPHQFRLS PTPSIGTLSD 180 TPMTGQKRDV FEKSIESLPQ QFGLSPTPSI GTLSDTPMTG RKRDAQDAFE KSIERRLRRK 240 IKNRESAARS RARKQARAYH NELVNKVSRL EEDNLKLKRE KEFDTKSQCE TSETRYQLRR 300 TSSASF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017646244.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017646245.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017646246.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2P5Y5R8	0.0	A0A2P5Y5R8_GOSBA; Uncharacterized protein
STRING	Gorai.013G266400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16714	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	5e-40	bZIP family protein