PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10518_BGI-A2_v1.0
Common NameF383_03252
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 654aa    MW: 72505.2 Da    PI: 8.4682
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10518_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.4e-22111212199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t++  d +g+ W++++iyr++++r++lt+GW+ Fv+ ++L +
  Cotton_A_10518_BGI-A2_v1.0 111 FAKTLTQSDANNGGGFSVPRYCAETIfpaldysADPPVQ--TVVAVDVHGQLWKFRHIYRGTPRRHLLTTGWSAFVNRKKLVA 191
                                 89****************************996555555..8***************************************** PP

                                 T-EEEEEE-SSSEE..EEEEE-S CS
                          B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                 gD+vvF   + +++  +v+++r+
  Cotton_A_10518_BGI-A2_v1.0 192 GDSVVFL--RAENGGIRVGIRRA 212
                                 *******..3477778****996 PP
2Auxin_resp108.95.4e-36252329783
                  Auxin_resp   7 tksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                  ++ FevvY+Pr+s++eF+v+++ v++a+kv+++ GmRfkmafetedss++++  Gt+++v+ +dpvrWp+S+Wr+L+
  Cotton_A_10518_BGI-A2_v1.0 252 GRKSFEVVYYPRTSRPEFCVRASAVNTAMKVPWCCGMRFKMAFETEDSSRISWfVGTISSVQVADPVRWPDSPWRLLE 329
                                 4678***********************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-36103213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-28109212IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-19110211No hitNo description
PROSITE profilePS5086312.534111213IPR003340B3 DNA binding domain
PfamPF023621.6E-20111212IPR003340B3 DNA binding domain
SMARTSM010191.2E-20111213IPR003340B3 DNA binding domain
PfamPF065074.2E-31252328IPR010525Auxin response factor
PROSITE profilePS5174519.262542622IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MELEKSLDPN LWHACAGSMV QIPPINSKVY YFPQGHAEHS LNSVDFPFSR QIPPLVLCRV  60
DSVKFMADVE TDEVYAKIML TPLQNNKPDV GDDDGVSNGG CNNIEKKAAS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPAL DYSADPPVQT VVAVDVHGQL WKFRHIYRGT PRRHLLTTGW  180
SAFVNRKKLV AGDSVVFLRA ENGGIRVGIR RAKLGIGDGD CYGSLGFYGD SKRNGKVKPE  240
EVLEAAKAAS GGRKSFEVVY YPRTSRPEFC VRASAVNTAM KVPWCCGMRF KMAFETEDSS  300
RISWFVGTIS SVQVADPVRW PDSPWRLLEV TWDEPDLLQN VNRVNPWSVE LASNVPAIHL  360
SPFLRPVKKL RLPQHLDGLL VQSFPSKPLS PSNPFYRLSD NAPVGIQGAR QVQFGLPLSD  420
LHLKNNLNSG LCLSGFQRFD LHDRIPDTFT NSCNNLSCNK SKIPKKCRFL LFGQPILTEQ  480
QLSQSSSSEA VSEVVSGNSC KTKDSSNGSG SVIGNQFSPE KSSTARFLWD WDNRAIEPCM  540
DTGHCKVFME SEDVGRTLDL SVLDSYEDLY RRLANMFGIE RSKMSGHVLY RDATGDVKRT  600
GDEPFSAFMK IAKRLTIRMD SSNNTIERSR LTGTRAAENG FHGSNKTGPL SIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-79735051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5857638e-70JX585763.1 Gossypium hirsutum clone NBRI_GE19427 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645690.10.0PREDICTED: auxin response factor 10-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0B0NCW80.0A0A0B0NCW8_GOSAR; Auxin response factor
STRINGGorai.013G267100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]