PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10499_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 287aa    MW: 32594.4 Da    PI: 6.3523
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10499_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.4e-111452148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W++eEd +l+d+++++G+g         g++R++k+c++rw++yl
  Cotton_A_10499_BGI-A2_v1.0 14 KGPWSPEEDSKLKDYIEKYGTG---------GLKRCGKSCRLRWLNYL 52
                                79********************.........889************97 PP

2Myb_DNA-binding38.62.5e-1259101246
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 g +T +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Cotton_A_10499_BGI-A2_v1.0  59 GEFTDDEDRIICTLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 101
                                 78*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17555IPR009057Homeodomain-like
PROSITE profilePS5129411.583952IPR017930Myb domain
SuperFamilySSF466891.3E-241199IPR009057Homeodomain-like
SMARTSM007175.8E-71354IPR001005SANT/Myb domain
PfamPF002491.1E-91452IPR001005SANT/Myb domain
CDDcd001674.28E-916103No hitNo description
PROSITE profilePS5129422.21153107IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2356107IPR009057Homeodomain-like
SMARTSM007176.6E-1257105IPR001005SANT/Myb domain
PfamPF002495.8E-1159101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KYGTGGLKRC GKSCRLRWLN YLRPNIKHGE  60
FTDDEDRIIC TLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLAM NGIPSQPQRK  120
PPPPPPPFSH QPQPVSSLYE DSTAYYYTPF EPIMSSAQSD LLNNTNLTNN SSLIQTPESL  180
FSHMQYHPMR DNFLMYGGEP SCSSSDGSYG KEMKQEDHMG FQGFGASLDY GTNNGVNQWI  240
EKQSGYNGEC PLDYNLEDVK RLISSNNNSF FIDENDAQDK AMYCCYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26141077108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527210.0KM052721.1 Gossypium hirsutum RAX-like transcription factor RAX2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645268.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A089N9361e-177A0A089N936_GOSHI; RAX-like transcription factor RAX2
STRINGGorai.013G269300.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-67myb domain protein 36