PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_10499_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32594.4 Da PI: 6.3523 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.4e-11 | 14 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++++G+g g++R++k+c++rw++yl Cotton_A_10499_BGI-A2_v1.0 14 KGPWSPEEDSKLKDYIEKYGTG---------GLKRCGKSCRLRWLNYL 52 79********************.........889************97 PP | |||||||
2 | Myb_DNA-binding | 38.6 | 2.5e-12 | 59 | 101 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T +Ed ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Cotton_A_10499_BGI-A2_v1.0 59 GEFTDDEDRIICTLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 101 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 5 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.583 | 9 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.3E-24 | 11 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-7 | 13 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-9 | 14 | 52 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.28E-9 | 16 | 103 | No hit | No description |
PROSITE profile | PS51294 | 22.211 | 53 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 56 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-12 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-11 | 59 | 101 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KYGTGGLKRC GKSCRLRWLN YLRPNIKHGE 60 FTDDEDRIIC TLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLAM NGIPSQPQRK 120 PPPPPPPFSH QPQPVSSLYE DSTAYYYTPF EPIMSSAQSD LLNNTNLTNN SSLIQTPESL 180 FSHMQYHPMR DNFLMYGGEP SCSSSDGSYG KEMKQEDHMG FQGFGASLDY GTNNGVNQWI 240 EKQSGYNGEC PLDYNLEDVK RLISSNNNSF FIDENDAQDK AMYCCYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-26 | 14 | 107 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM052721 | 0.0 | KM052721.1 Gossypium hirsutum RAX-like transcription factor RAX2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645268.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A089N936 | 1e-177 | A0A089N936_GOSHI; RAX-like transcription factor RAX2 | ||||
STRING | Gorai.013G269300.1 | 1e-177 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-67 | myb domain protein 36 |