PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10388_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 375aa    MW: 41065.2 Da    PI: 6.5607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10388_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.3e-21169218255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa+a+++a+++++g
  Cotton_A_10388_BGI-A2_v1.0 169 RYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAARAYDEAALRFRG 218
                                 7********.**********9...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-22169227IPR016177DNA-binding domain
PfamPF008474.6E-15169218IPR001471AP2/ERF domain
PROSITE profilePS5103225.791169226IPR001471AP2/ERF domain
SMARTSM003801.2E-37169232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-33169227IPR001471AP2/ERF domain
PRINTSPR003679.4E-12170181IPR001471AP2/ERF domain
CDDcd000189.43E-16177228No hitNo description
PRINTSPR003679.4E-12192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
LPNKVAHQNR SGEFVGFPPV GDGGPEQQEH DSCRQRQAED RVESSDMFFG SQSHHQATEM  60
SAMVSALTHV VSGQRFAAWD CYPSNMDATC FQHTQTGSAS GLAPCKIGQK RGRAEDVTAH  120
LVQTSSHAHS SSPATSVTEE TETAATTSME TAGEAAAASN EETGEPRRRY RGVRQRPWGK  180
WAAEIRDPNK AARVWLGTFD TAEAAARAYD EAALRFRGNR AKLNFPENVR VVVPQPMQNF  240
PTTQTPVSSS QTTHFPPYYQ SPPTADMLRD YWQYSQLLQS CNDFHEQQAT SLLNQMIQSS  300
QLPNVQPPLL SSSLSPPLLS SPSSSASASF PLLFGEQHQM GISRAPFNQT QASQLDFPVP  360
PPPWSHPGHH SSSTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23168229163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647909.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A2P5RIS00.0A0A2P5RIS0_GOSBA; Uncharacterized protein
STRINGGorai.005G078100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15224819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.14e-16ERF family protein