PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10385_BGI-A2_v1.0
Common NameF383_04391
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 257aa    MW: 28486.4 Da    PI: 5.3291
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10385_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.53.4e-14175235362
                                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
                      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 
                                 + +r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN+ L k+++e+ k+  ++l  +
  Cotton_A_10385_BGI-A2_v1.0 175 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEWLlKEKAERTKERFKQLMEK 235
                                 679**************************************86267788888888888665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.7E-12171233No hitNo description
SMARTSM003383.3E-9173237IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.45175227IPR004827Basic-leucine zipper domain
PfamPF001708.7E-13175235IPR004827Basic-leucine zipper domain
CDDcd147071.06E-17177223No hitNo description
SuperFamilySSF579591.05E-9177228No hitNo description
PROSITE patternPS000360180195IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTVDGILRNV YSAAPSTETT LVDASITLID APIPNSVSDN PEVPQVQTVA DCNNNVAKSV  60
DEVWREIVSG ERKEITMKEE VPDEMMTLED FLAKAGAVEE AAAVASAEVK LHPDRLSGGV  120
YTFDPVGGGA FQILDKMEGS IVGLGNGMEV IGSGGGGGRG KRGRGVLMEP LDKAAQQRQR  180
RMIKNRESAA RSRERKQAYQ VELESLAVRL EEENEWLLKE KAERTKERFK QLMEKVVPVV  240
EQRRPPRMLR RVRSLQW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6517850.0EF651785.1 Gossypium hirsutum transcription factor TF3 (TF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016742206.10.0PREDICTED: G-box-binding factor 4-like isoform X1
RefseqXP_017649855.10.0PREDICTED: G-box-binding factor 4
SwissprotP427773e-64GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A0B0PRP60.0A0A0B0PRP6_GOSAR; G-box-binding factor 4-like protein
TrEMBLA0A1U8NT990.0A0A1U8NT99_GOSHI; G-box-binding factor 4-like isoform X1
STRINGGorai.005G078500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.15e-44bZIP family protein