PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_10375_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 21568.9 Da PI: 5.0357 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 6e-18 | 33 | 81 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+++l+g Cotton_A_10375_BGI-A2_v1.0 33 YRGVRRRT-SGKWVSEIREPK----KpNRIWLGTFPTPEMAAIAYDVAALALKG 81 9****888.8*********94....468***********************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-30 | 32 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.761 | 32 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-20 | 32 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-34 | 32 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-11 | 33 | 44 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.82E-30 | 33 | 91 | No hit | No description |
Pfam | PF00847 | 9.3E-11 | 33 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-11 | 71 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MHYSKPGKSS NASSGGGGAS SSAGGASERH RLYRGVRRRT SGKWVSEIRE PKKPNRIWLG 60 TFPTPEMAAI AYDVAALALK GQDAELNFPN SAASLPVPAS SSPRDIQAAA TSAAAALGAA 120 NDALFGNEDN ESQGNNISRV VPEKPTTAYE FVDEDMIFDM PNVLANMAEG MLLSPPRWDI 180 DIAADHVPAY NTGDYENLWK FP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 25 | 90 | 7 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629427.1 | 1e-146 | PREDICTED: ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 2e-54 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A1U8HNX1 | 1e-144 | A0A1U8HNX1_GOSHI; ethylene-responsive transcription factor ERF024-like | ||||
STRING | Gorai.009G407200.1 | 1e-115 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6424 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36450.1 | 6e-38 | ERF family protein |