PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10243_BGI-A2_v1.0
Common NameF383_10393
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 853aa    MW: 93824.9 Da    PI: 6.0305
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10243_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-181977357
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cotton_A_10243_BGI-A2_v1.0 19 KYVRYTPEQVEALERVYNECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                                6789*****************************************************97 PP

2START171.45.8e-541693762204
                                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE CS
                       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev 84 
                                 +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l  
  Cotton_A_10243_BGI-A2_v1.0 169 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCIDVLSI 250
                                 7899******************************************************.8888888888************** PP

                                 ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS
                       START  85 issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161
                                 i ++  g+++l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   + s+vRae+lpSg+li+p+++g+
  Cotton_A_10243_BGI-A2_v1.0 251 IPTAngGTIELIYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppTTSFVRAEMLPSGFLIRPCDGGG 333
                                 **9999**********************************************99999999*********************** PP

                                 EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                       START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                 s +++v+hvdl+ ++++++lr+l++s+ + ++k++ a+l++ +
  Cotton_A_10243_BGI-A2_v1.0 334 SIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIR 376
                                 **************************************99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-18477IPR009057Homeodomain-like
PROSITE profilePS5007115.7581478IPR001356Homeobox domain
SMARTSM003891.6E-151682IPR001356Homeobox domain
PfamPF000462.7E-161977IPR001356Homeobox domain
CDDcd000868.29E-171979No hitNo description
SuperFamilySSF466891.75E-161981IPR009057Homeodomain-like
CDDcd146861.81E-671110No hitNo description
PROSITE profilePS5084826.735159387IPR002913START domain
CDDcd088755.47E-66163379No hitNo description
Gene3DG3DSA:3.30.530.204.1E-23168373IPR023393START-like domain
SMARTSM002347.1E-51168378IPR002913START domain
PfamPF018521.5E-51169376IPR002913START domain
SuperFamilySSF559613.71E-38169380No hitNo description
SuperFamilySSF559613.71E-6416501No hitNo description
SuperFamilySSF559613.71E-6529602No hitNo description
PfamPF086706.4E-50705852IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MALSMHKESL NNKQMDSSKY VRYTPEQVEA LERVYNECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS HLVYENGYMK  120
QQLQTASVTT TDNNSCESVV VSGQHQQQQN PTPRHPQRDA NNPAGLLTIA EETLAEFLSK  180
ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLEPTKVAE ILKDRPSWYR  240
DCRCIDVLSI IPTANGGTIE LIYMQTYAPT TLAAARDFWT LRYTTSLEDG SLVICERSLT  300
SSTGGPTGPP TTSFVRAEML PSGFLIRPCD GGGSIIHIVD HVDLDVWSVP EVLRPLYESS  360
KILAQKMTIA ALRHIRQIAQ ETNGEIQYGS GRQPAVLRTF SQRLCRGFND AVNGFVDDGW  420
SLMGSDGVED VTIMINSSPG KFFGSQYNTS MVPSFGGGVL CAKASMLLQS VPPALLVRFL  480
REHRSEWADY GIDTYSASCL KPNPYTVPCA RPSGFPSSQV ILPLAHTVEH EEFLEVVRLE  540
GQAFTPEDVA LARDMYLLQL CSGIDENEVG ACAQLVFAPI DESFADNAPL LPSGFRVIPL  600
DSKPVMDGPG AARTLDLAST LEVGPGSNRS TGDGETNSYN LRSVLTIAFQ FTFENHLRDD  660
VASMARQYVR SVVGSVQRVA MAIAPSRISS GLGPKSLPGS PEALTLVRWI CQSYRIHTGG  720
ELLRADSQSG DALLKQLWNH SDAIMCCSLK TNASPVFTFA NQAGLDMLET TLVALQDIML  780
DKILDEAGRK SLCSEFSKIM QQGFAHLPAG ICVSSMGRPV SYEQVIVWKV VDDDNDDAAN  840
HCLALMFVNW SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649973.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLA0A0B0ND380.0A0A0B0ND38_GOSAR; Homeobox-leucine zipper ATHB-14-like protein
STRINGGorai.011G004200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42562653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]