PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_10243_BGI-A2_v1.0 | ||||||||
Common Name | F383_10393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 853aa MW: 93824.9 Da PI: 6.0305 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1e-18 | 19 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Cotton_A_10243_BGI-A2_v1.0 19 KYVRYTPEQVEALERVYNECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 6789*****************************************************97 PP | |||||||
2 | START | 171.4 | 5.8e-54 | 169 | 376 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev 84 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l Cotton_A_10243_BGI-A2_v1.0 169 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCIDVLSI 250 7899******************************************************.8888888888************** PP ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS START 85 issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161 i ++ g+++l++++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ + s+vRae+lpSg+li+p+++g+ Cotton_A_10243_BGI-A2_v1.0 251 IPTAngGTIELIYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppTTSFVRAEMLPSGFLIRPCDGGG 333 **9999**********************************************99999999*********************** PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 s +++v+hvdl+ ++++++lr+l++s+ + ++k++ a+l++ + Cotton_A_10243_BGI-A2_v1.0 334 SIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIR 376 **************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 4 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.758 | 14 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-15 | 16 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-16 | 19 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.29E-17 | 19 | 79 | No hit | No description |
SuperFamily | SSF46689 | 1.75E-16 | 19 | 81 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.81E-6 | 71 | 110 | No hit | No description |
PROSITE profile | PS50848 | 26.735 | 159 | 387 | IPR002913 | START domain |
CDD | cd08875 | 5.47E-66 | 163 | 379 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.1E-23 | 168 | 373 | IPR023393 | START-like domain |
SMART | SM00234 | 7.1E-51 | 168 | 378 | IPR002913 | START domain |
Pfam | PF01852 | 1.5E-51 | 169 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.71E-38 | 169 | 380 | No hit | No description |
SuperFamily | SSF55961 | 3.71E-6 | 416 | 501 | No hit | No description |
SuperFamily | SSF55961 | 3.71E-6 | 529 | 602 | No hit | No description |
Pfam | PF08670 | 6.4E-50 | 705 | 852 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 853 aa Download sequence Send to blast |
MALSMHKESL NNKQMDSSKY VRYTPEQVEA LERVYNECPK PSSLRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS HLVYENGYMK 120 QQLQTASVTT TDNNSCESVV VSGQHQQQQN PTPRHPQRDA NNPAGLLTIA EETLAEFLSK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLEPTKVAE ILKDRPSWYR 240 DCRCIDVLSI IPTANGGTIE LIYMQTYAPT TLAAARDFWT LRYTTSLEDG SLVICERSLT 300 SSTGGPTGPP TTSFVRAEML PSGFLIRPCD GGGSIIHIVD HVDLDVWSVP EVLRPLYESS 360 KILAQKMTIA ALRHIRQIAQ ETNGEIQYGS GRQPAVLRTF SQRLCRGFND AVNGFVDDGW 420 SLMGSDGVED VTIMINSSPG KFFGSQYNTS MVPSFGGGVL CAKASMLLQS VPPALLVRFL 480 REHRSEWADY GIDTYSASCL KPNPYTVPCA RPSGFPSSQV ILPLAHTVEH EEFLEVVRLE 540 GQAFTPEDVA LARDMYLLQL CSGIDENEVG ACAQLVFAPI DESFADNAPL LPSGFRVIPL 600 DSKPVMDGPG AARTLDLAST LEVGPGSNRS TGDGETNSYN LRSVLTIAFQ FTFENHLRDD 660 VASMARQYVR SVVGSVQRVA MAIAPSRISS GLGPKSLPGS PEALTLVRWI CQSYRIHTGG 720 ELLRADSQSG DALLKQLWNH SDAIMCCSLK TNASPVFTFA NQAGLDMLET TLVALQDIML 780 DKILDEAGRK SLCSEFSKIM QQGFAHLPAG ICVSSMGRPV SYEQVIVWKV VDDDNDDAAN 840 HCLALMFVNW SFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017649973.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | A0A0B0ND38 | 0.0 | A0A0B0ND38_GOSAR; Homeobox-leucine zipper ATHB-14-like protein | ||||
STRING | Gorai.011G004200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4256 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |