PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_10170_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 232aa MW: 27092.5 Da PI: 8.0572

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_10170_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.7	1.2e-45	4	139	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrk 74 +ppGfrF Pt+eelv++yL+kk+e+k+ + +++vi+ vdiy+++PwdLp+ ++++ ++w+fF++r++++a+g r+ Cotton_A_10170_BGI-A2_v1.0 4 MPPGFRFYPTEEELVSFYLHKKLEAKTdddlnHVMNRVIPVVDIYNFNPWDLPQfsdnLCHKDPEQWFFFIPRQESEARGGRP 86 79**********************988876555668**********9656654445677************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +r t+sgyWkatg+ v+s++++ +g+k+t+vfy+grap+g+ktdW m+ey+ Cotton_A_10170_BGI-A2_v1.0 87 KRLTSSGYWKATGSPGYVYSSNSRPIGVKRTMVFYNGRAPNGKKTDWKMNEYK 139 **************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-48	3	168	IPR003441	NAC domain
PROSITE profile	PS51005	49.304	4	168	IPR003441	NAC domain
Pfam	PF02365	4.3E-23	5	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEDMPPGFRF YPTEEELVSF YLHKKLEAKT DDDLNHVMNR VIPVVDIYNF NPWDLPQFSD 60 NLCHKDPEQW FFFIPRQESE ARGGRPKRLT SSGYWKATGS PGYVYSSNSR PIGVKRTMVF 120 YNGRAPNGKK TDWKMNEYKA IQDHVSLANA TTPPILRQEF SLCRVYKKSK CLRSFDRRPP 180 GILKMGESIP RLDNNHINRF TQIGMNDNSS TKTDVVDDDE YAFWDVDGFW NL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-34	4	168	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-34	4	168	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-34	4	168	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-34	4	168	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	1e-34	4	168	17	165	NAC domain-containing protein 19
4dul_B	1e-34	4	168	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847247	0.0	KC847247.1 Gossypium hirsutum NAC domain protein NAC70 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622614.1	1e-176	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	9e-75	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2C9DNQ3	1e-173	A0A2C9DNQ3_GOSHI; NAC transcription factor NAC79
STRING	Gorai.002G238300.1	1e-165	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-77	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]