PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10145_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 177aa    MW: 19891.7 Da    PI: 7.8188
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10145_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.51.5e-40111101100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++slvyeAear+rdPvyG++g i  l
  Cotton_A_10145_BGI-A2_v1.0  11 SCAACKLLKRRCSPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLVYEAEARLRDPVYGCIGAIALL 93 
                                 6********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 q+++ +l+++lal++++
  Cotton_A_10145_BGI-A2_v1.0  94 QRKMIELQHDLALARAR 110
                                 ************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.44410111IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MRSHEPRSTS SCAACKLLKR RCSPTCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP  60
EEQREDTVNS LVYEAEARLR DPVYGCIGAI ALLQRKMIEL QHDLALARAR LARYAANYST  120
GVAGTELDRL TMTGLGEFLV ACGGFMDSFN QSSSYQVNQD AHMYDLTQIP YVYHDQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4761226122LOB family transfactor Ramosa2.1
5ly0_B6e-4761226122LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622518.11e-131PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL81e-66LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A2P5X0H91e-129A0A2P5X0H9_GOSBA; Uncharacterized protein
STRINGEOY177203e-96(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.13e-63LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]