PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10020_BGI-A2_v1.0
Common NameF383_32963
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 255aa    MW: 29012.7 Da    PI: 9.5281
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10020_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.2e-51141381128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrFhPtdeelvv+yL++kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyW
  Cotton_A_10020_BGI-A2_v1.0  14 LPPGFRFHPTDEELVVQYLRRKVLAWPLPA-SIIPEVDVCKADPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATFSGYW 92 
                                 79****************************.89***************54...46799************************* PP

                         NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg dk+++s  ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  Cotton_A_10020_BGI-A2_v1.0  93 KATGIDKQIVSCrGNQVVGMKKTLVFYRGKPPQGTRTDWIMHEYRL 138
                                 *********98757788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-609171IPR003441NAC domain
PROSITE profilePS5100557.04614171IPR003441NAC domain
PfamPF023651.2E-2615138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEKLNFVNNG VLRLPPGFRF HPTDEELVVQ YLRRKVLAWP LPASIIPEVD VCKADPWDLP  60
GDLEQERYFF STREAKYPNG NRSNRATFSG YWKATGIDKQ IVSCRGNQVV GMKKTLVFYR  120
GKPPQGTRTD WIMHEYRLVT ADTCNAPHKK NQTQNHVVAV ENWVLCRIFL TKRSGGATKN  180
EEDSLQSSNE KGVGKARRKS PVFYEFLSKE RTNLNLAPAS SSSCSSGITQ VSNNDTDDHE  240
ESSSCNSFPY FRRKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521217515169NO APICAL MERISTEM PROTEIN
1ut4_B4e-521217515169NO APICAL MERISTEM PROTEIN
1ut7_A4e-521217515169NO APICAL MERISTEM PROTEIN
1ut7_B4e-521217515169NO APICAL MERISTEM PROTEIN
3swm_A4e-521217518172NAC domain-containing protein 19
3swm_B4e-521217518172NAC domain-containing protein 19
3swm_C4e-521217518172NAC domain-containing protein 19
3swm_D4e-521217518172NAC domain-containing protein 19
3swp_A4e-521217518172NAC domain-containing protein 19
3swp_B4e-521217518172NAC domain-containing protein 19
3swp_C4e-521217518172NAC domain-containing protein 19
3swp_D4e-521217518172NAC domain-containing protein 19
4dul_A4e-521217515169NAC domain-containing protein 19
4dul_B4e-521217515169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106420.0KC110642.1 Gossypium hirsutum NAC protein 7 (NAC7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666241.10.0PREDICTED: NAC domain-containing protein 83-like
RefseqXP_017643855.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY939e-99NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B0PL930.0A0A0B0PL93_GOSAR; Uncharacterized protein
TrEMBLA0A0B0PMU10.0A0A0B0PMU1_GOSAR; Uncharacterized protein
TrEMBLA0A1U8HJL20.0A0A1U8HJL2_GOSHI; NAC domain-containing protein 83-like
STRINGGorai.005G195300.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-100NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]