PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_09977_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 24672.9 Da PI: 7.2137 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.8 | 3.5e-15 | 69 | 117 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ ++ l+g Cotton_A_09977_BGI-A2_v1.0 69 LYHGIRRR--SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVGALTLKG 117 699**854..6*********843...5*******************99998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.07E-25 | 68 | 127 | No hit | No description |
Pfam | PF00847 | 7.2E-9 | 68 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-17 | 69 | 127 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-25 | 69 | 126 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-24 | 69 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.098 | 69 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MADPNNPTNV PQLNQSSPRP VPLSLDQHSL ITTNSHTCQN PPTCHGLPPP TPRKATMASA 60 SSPSGKHPLY HGIRRRSGKW VSEIREPRKT TRIWLGTYPT PEMAAAAYDV GALTLKGAEA 120 FVNFPASVAS YPLPASILSA DIRKAAAAAA LLKKAESKGI EIDLGSGHPH PAKKEEMTST 180 EEYMDKDVFL NLPNLLVDMA EGLLVSPLRL SSTPSDDSPG NSDGESLWSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016717049.1 | 1e-146 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 5e-49 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A1U8LUZ1 | 1e-145 | A0A1U8LUZ1_GOSHI; ethylene-responsive transcription factor ERF027-like | ||||
STRING | Gorai.004G208000.1 | 1e-137 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 3e-47 | ERF family protein |
Publications ? help Back to Top | |||
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