PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_09964_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 335aa MW: 35753.3 Da PI: 10.0522 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104.7 | 1.5e-32 | 62 | 182 | 2 | 106 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ss 67 ++k+++++++hTkv+gR+RR+R++a+ aar+F+L++eLG+++d++ti WLl+ a++ai e+tgt ++ Cotton_A_09964_BGI-A2_v1.0 62 TVKRSSTKDRHTKVEGRGRRIRIPATFAARIFQLTRELGHKSDGETIRWLLEHAEQAI-EITGTgtvpaiavsvggtlkipTT 143 789*****************************************************98.799994455555555444444322 PP TCP 68 ssaseceaesssssasnsssgkaaksaakskksqksaas 106 s ++++++++++++ + ++ +k++k +ks++ ++++ + Cotton_A_09964_BGI-A2_v1.0 144 SGSNASNNKNNNNQIDDDGGAKKRKRPTKSEFCDRNDGN 182 222222333333333333333555555555555555554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-26 | 67 | 160 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 22.441 | 68 | 122 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 335 aa Download sequence Send to blast |
MDLDDDGGTS DLSTSAGEPN AATEKICENS AFQIMLFKEQ PIDSHPLPLI GVVPVSMRPL 60 PTVKRSSTKD RHTKVEGRGR RIRIPATFAA RIFQLTRELG HKSDGETIRW LLEHAEQAIE 120 ITGTGTVPAI AVSVGGTLKI PTTSGSNASN NKNNNNQIDD DGGAKKRKRP TKSEFCDRND 180 GNPFAISNQQ HLVTQASGLA PVTPQGLVPV WVVGNTGMMI PANEFWMIPQ PTATGAANGR 240 LSNQQPSSPQ IWALSPSVFN VAARPISSIV STSNQSVCNG LSTSAVNRSS TAVAKKSTMA 300 PSGSSGGGKA QMRRDFLLEI YAKKELQLMG RSDSH |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476041.1 | 0.0 | PREDICTED: transcription factor TCP19-like | ||||
TrEMBL | A0A0D2R828 | 0.0 | A0A0D2R828_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G206900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17337 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51910.2 | 3e-56 | TCP family protein |