PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09964_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 335aa    MW: 35753.3 Da    PI: 10.0522
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09964_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.71.5e-32621822106
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ss 67 
                                 ++k+++++++hTkv+gR+RR+R++a+ aar+F+L++eLG+++d++ti WLl+ a++ai e+tgt                 ++
  Cotton_A_09964_BGI-A2_v1.0  62 TVKRSSTKDRHTKVEGRGRRIRIPATFAARIFQLTRELGHKSDGETIRWLLEHAEQAI-EITGTgtvpaiavsvggtlkipTT 143
                                 789*****************************************************98.799994455555555444444322 PP

                         TCP  68 ssaseceaesssssasnsssgkaaksaakskksqksaas 106
                                 s ++++++++++++ + ++ +k++k  +ks++ ++++ +
  Cotton_A_09964_BGI-A2_v1.0 144 SGSNASNNKNNNNQIDDDGGAKKRKRPTKSEFCDRNDGN 182
                                 222222333333333333333555555555555555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2667160IPR005333Transcription factor, TCP
PROSITE profilePS5136922.44168122IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDLDDDGGTS DLSTSAGEPN AATEKICENS AFQIMLFKEQ PIDSHPLPLI GVVPVSMRPL  60
PTVKRSSTKD RHTKVEGRGR RIRIPATFAA RIFQLTRELG HKSDGETIRW LLEHAEQAIE  120
ITGTGTVPAI AVSVGGTLKI PTTSGSNASN NKNNNNQIDD DGGAKKRKRP TKSEFCDRND  180
GNPFAISNQQ HLVTQASGLA PVTPQGLVPV WVVGNTGMMI PANEFWMIPQ PTATGAANGR  240
LSNQQPSSPQ IWALSPSVFN VAARPISSIV STSNQSVCNG LSTSAVNRSS TAVAKKSTMA  300
PSGSSGGGKA QMRRDFLLEI YAKKELQLMG RSDSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476041.10.0PREDICTED: transcription factor TCP19-like
TrEMBLA0A0D2R8280.0A0A0D2R828_GOSRA; Uncharacterized protein
STRINGGorai.004G206900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17337611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.23e-56TCP family protein