PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09961_BGI-A2_v1.0
Common NameF383_11527
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 291aa    MW: 32799.9 Da    PI: 6.799
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09961_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.4e-082402732154
                                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 k +yp+++++++L +++gL+ +q+ +WF N+R +
  Cotton_A_09961_BGI-A2_v1.0 240 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273
                                 469*****************************87 PP
2ELK25.53e-09194215122
                         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                 ELK +L++++++++ ++++E++
  Cotton_A_09961_BGI-A2_v1.0 194 ELKIELKQGFKSRIEDVREEIL 215
                                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-182670IPR005540KNOX1
PfamPF037901.7E-162869IPR005540KNOX1
SMARTSM012563.0E-2483138IPR005541KNOX2
PfamPF037911.5E-1786137IPR005541KNOX2
PROSITE profilePS512139.132194214IPR005539ELK domain
PROSITE profilePS5007111.677214277IPR001356Homeobox domain
SMARTSM003891.4E-10216281IPR001356Homeobox domain
SuperFamilySSF466893.81E-16216281IPR009057Homeodomain-like
CDDcd000864.75E-11217278No hitNo description
Gene3DG3DSA:1.10.10.606.7E-25221279IPR009057Homeodomain-like
PfamPF059209.7E-18234273IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSSGGGSGGI GGLSSGEVSV SGEQNRQLKS EIAVHPLYEQ LLAAHVSCLR VATPIDQLPL  60
IDAQLAQSHN LLRSYASQHQ HGHSLSPHER QELDNFLAQY LIVLCTFKEQ LQQHVRVHAV  120
EAVMACREIE NNLQALTGVT LGEGTGATMS DDEDDMQMDF SLDQSGTDGH DLMGFGPLIP  180
TESERSLMER VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTTV LKNWWQQHSK  240
WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTSLKSKRK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12217273864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270290RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2002500.0KC200250.1 Gossypium hirsutum KNOX protein (KNL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626698.10.0PREDICTED: homeobox protein HD1-like
SwissprotQ9FPQ81e-172KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0B0N6670.0A0A0B0N667_GOSAR; Homeobox HD1
STRINGGorai.004G206600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-171KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]