PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09943_BGI-A2_v1.0
Common NameF383_19957
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 247aa    MW: 26571.9 Da    PI: 8.5862
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09943_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.38.5e-26136180145
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rs+k +e+
  Cotton_A_09943_BGI-A2_v1.0 136 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSTKLVEA 180
                                 79****************************************997 PP
2QLQ46.41.2e-1667101337
                         QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                 FT  Qlq+L  Q l+yKy+ a++PvP++Ll++i+k
  Cotton_A_09943_BGI-A2_v1.0  67 FTIFQLQELQLQSLIYKYMEAGLPVPHHLLLPIWK 101
                                 7778*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.9E-665101IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.35566101IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.9E-1167100IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.509136180IPR014977WRC domain
PfamPF088797.4E-22137179IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEPQDSSPLK TGHFSDLGIG LTNLGDSGNM ESNRLSGGEG SPPIGLGLEL GCGSGHIQTG  60
ITKSCGFTIF QLQELQLQSL IYKYMEAGLP VPHHLLLPIW KSVAGSLGGL HGSPYQLYYG  120
FLGCGPLQLG YKNGVDPEPG RCRRTDGKKW RCSKEAVPDH KYCERHMHRG RQRSTKLVEA  180
SQVTRTSISR NNANTNLSIS LQVDSSNNSG NGSNLSSSFT GFSPNIALLR GGDSKAVPLS  240
PQFQELL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625396.10.0PREDICTED: growth-regulating factor 10-like
TrEMBLA0A0B0NRG61e-180A0A0B0NRG6_GOSAR; Transmembrane 7 superfamily member 3
STRINGGorai.004G204600.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16724712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.16e-35growth-regulating factor 5